TSS: Rfhg 115597.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=intron (NM_138691, intron 1 of 23)
|annotation=intron (NM_138691, intron 1 of 23)
|ccre_category=dELS
|ccre_category=dELS
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|nearest_promoter_id=NM_138691
|nearest_promoter_id=NM_138691
|nearest_refseq=NM_138691
|nearest_refseq=NM_138691
|nearest_transcripts=
|nearest_unigene=Hs.670211
|nearest_unigene=Hs.670211
|peak_score=1
|peak_score=1

Revision as of 01:54, 7 November 2024

Basic information about the TSS


TSS ID:rfhg_115597.1
Species:human
Chr:chr9
Start:72527656
End:72527670
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:dELS,CTCF-bound (EH38D4195397,EH38E2696867)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:TMC1
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:5862
    Nearest PromoterID:NM_138691
    Entrez ID:117531
    Nearest Unigene:Hs.670211
    Nearest Refseq:NM_138691
    Nearest Ensembl:ENSG00000165091
    Gene Name:TMC1
    Gene Alias:DFNA36|DFNB11|DFNB7
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.466667
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):