TSS: Rfhg 115610.1: Difference between revisions

Revision as of 01:54, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_115610.1
Species:	human
Chr:	chr9

Start:	72901157
End:	72901173
Strand:	+

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D1979277,EH38E0999976)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINC01474
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-27056
Nearest PromoterID:	NR_121120
Entrez ID:	101927258
Nearest Unigene:	Hs.586433
Nearest Refseq:	NR_121120
Nearest Ensembl:	ENSG00000236849
Gene Name:	LINC01474
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.470588
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=3' UTR (NM_000689, exon 13 of 13)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_121120
 |nearest_refseq=NR_121120
+|nearest_transcripts=
 |nearest_unigene=Hs.586433
 |peak_score=1