TSS: Rfhg 115642.1: Difference between revisions

Revision as of 01:54, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_115642.1
Species:	human
Chr:	chr9

Start:	72949967
End:	72949994
Strand:	-

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D4195739,EH38E2697118)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ALDH1A1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	3073
Nearest PromoterID:	NM_000689
Entrez ID:	216
Nearest Unigene:	Hs.76392
Nearest Refseq:	NM_000689
Nearest Ensembl:	ENSG00000165092
Gene Name:	ALDH1A1
Gene Alias:	ALDC\|ALDH-E1\|ALDH1\|ALDH11\|HEL-9\|HEL-S-53e\|HEL12\|PUMB1\|RALDH1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.464286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_000689, intron 1 of 12)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_000689
 |nearest_refseq=NM_000689
+|nearest_transcripts=
 |nearest_unigene=Hs.76392
 |peak_score=1