TSS: Rfhg 116034.1: Difference between revisions

Revision as of 02:07, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_116034.1
Species:	human
Chr:	chr9

Start:	83434647
End:	83434647
Strand:	-

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D4203548,EH38E2701960)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	FRMD3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	33095
Nearest PromoterID:	NM_001244960
Entrez ID:	257019
Nearest Unigene:	Hs.127535
Nearest Refseq:	NM_174938
Nearest Ensembl:	ENSG00000172159
Gene Name:	FRMD3
Gene Alias:	4.1O\|EPB41L4O\|EPB41LO\|P410
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_174938, intron 1 of 13)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001244960
 |nearest_refseq=NM_174938
+|nearest_transcripts=
 |nearest_unigene=Hs.127535
 |peak_score=1