TSS: Rfhg 116596.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000457976.1:107
|annotation=intron (NR_135306, intron 2 of 2)
|annotation=intron (NR_135306, intron 2 of 2)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NR_135306
|nearest_promoter_id=NR_135306
|nearest_refseq=NR_135306
|nearest_refseq=NR_135306
|nearest_transcripts=
|nearest_unigene=Hs.522287
|nearest_unigene=Hs.522287
|peak_score=1
|peak_score=1

Revision as of 02:29, 7 November 2024

Basic information about the TSS

TSS ID:rfhg_116596.1
Species:human
Chr:chr9
Start:91163194
End:91163236
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D4210392,EH38E2706686)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000457976.1:107
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:LINC00484
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:44153
    Nearest PromoterID:NR_135306
    Entrez ID:100129347
    Nearest Unigene:Hs.522287
    Nearest Refseq:NR_135306
    Nearest Ensembl:ENSG00000229694
    Gene Name:LINC00484
    Gene Alias:C9orf73
    Gene Type:ncRNA
    CpG%:0.000000
    GC%:0.488372
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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