TSS: Rfhg 119001.1: Difference between revisions

Revision as of 04:20, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_119001.1
Species:	human
Chr:	chr9

Start:	121963720
End:	121963737
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4236005,EH38E2724377)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001386833.1:0 NM_001386832.1:0 NR_171569.1:0 NR_171570.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000411790.1:1 BC039180:1 view more...

Gene_name:	TTLL11
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	129878
Nearest PromoterID:	NM_194252
Entrez ID:	158135
Nearest Unigene:	Hs.438937
Nearest Refseq:	NM_194252
Nearest Ensembl:	ENSG00000175764
Gene Name:	TTLL11
Gene Alias:	C9orf20\|bA244O19.1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.388889
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001386833.1:0 NM_001386832.1:0 NR_171569.1:0 NR_171570.1:0 ENST00000411790.1:1 BC039180:1
 |annotation=intron (NM_001139442, intron 6 of 8)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_194252
 |nearest_refseq=NM_194252
+|nearest_transcripts=ENST00000411790.1:1 BC039180:1
 |nearest_unigene=Hs.438937
 |peak_score=1