TSS: Rfhg 119746.1: Difference between revisions

Revision as of 04:53, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_119746.1
Species:	human
Chr:	chr9

Start:	128192928
End:	128192954
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4242519,EH38E2729356)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CIZ1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-837
Nearest PromoterID:	NM_001257975
Entrez ID:	25792
Nearest Unigene:	Hs.212395
Nearest Refseq:	NM_012127
Nearest Ensembl:	ENSG00000148337
Gene Name:	CIZ1
Gene Alias:	LSFR1\|NP94\|ZNF356
Gene Type:	protein-coding
CpG%:	0.230769
GC%:	0.851852
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NM_001257975)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001257975
 |nearest_refseq=NM_012127
+|nearest_transcripts=
 |nearest_unigene=Hs.212395
 |peak_score=1