TSS: Rfhg 12007.1: Difference between revisions

Revision as of 05:10, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_12007.1
Species:	human
Chr:	chr1

Start:	149082396
End:	149082396
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000613595.4:85 ENST00000584027.8:85 ENST00000613969.4:85 ENST00000621074.4:85 ENST00000610300.4:85 AY894574:85
GeneID:	400818
HGNC/MGI_ID:	HGNC:31991
UniProt_ID:	A0A087WVG0 A0A087WYQ9 P0DPF3
Nearer transcript ids and distances:	BC167783:256

Gene_name:	NBPF9
Gene_symbol:	NBPF9
Gene_synonyms:	AE01
Gene_source:	HGNC:31991

TATA-Box annotation

Distance to TSS:	-85
Nearest PromoterID:	NM_001277444
Entrez ID:	400818
Nearest Unigene:	Hs.445080
Nearest Refseq:	NM_001037675
Nearest Ensembl:	ENSG00000269713
Gene Name:	NBPF9
Gene Alias:	AE01
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000613595.4:85 ENST00000584027.8:85 ENST00000613969.4:85 ENST00000621074.4:85 ENST00000610300.4:85 AY894574:85 BC167783:256
 |annotation=promoter-TSS (NM_001037675)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001277444
 |nearest_refseq=NM_001037675
+|nearest_transcripts=BC167783:256
 |nearest_unigene=Hs.445080
 |peak_score=1