TSS: Rfhg 123321.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF346173:-44 MA581750:-44 BC078172:-86 ENST00000605833.1:-87 NR_108061.1:-87 LF346171:176 MA581748:176 LF346168:377 MA581745:377 ENST00000661048.1:448 | |||
|annotation=non-coding (NR_108061, exon 1 of 3) | |annotation=non-coding (NR_108061, exon 1 of 3) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NR_108061 | |nearest_promoter_id=NR_108061 | ||
|nearest_refseq=NR_108060 | |nearest_refseq=NR_108060 | ||
|nearest_transcripts=BC078172:-86 ENST00000605833.1:-87 NR_108061.1:-87 LF346171:176 MA581748:176 LF346168:377 MA581745:377 ENST00000661048.1:448 | |||
|nearest_unigene=Hs.740502 | |nearest_unigene=Hs.740502 | ||
|peak_score=1 | |peak_score=1 |
Revision as of 07:24, 7 November 2024
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D2319506,EH38E1451816) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 102 |
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Nearest PromoterID: | NR_108061 |
Entrez ID: | 100507347 |
Nearest Unigene: | Hs.740502 |
Nearest Refseq: | NR_108060 |
Nearest Ensembl: | ENSG00000229124 |
Gene Name: | VIM-AS1 |
Gene Alias: | - |
Gene Type: | ncRNA |
CpG%: | 0.133333 |
GC%: | 0.677419 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |