TSS: Rfhg 125275.1: Difference between revisions

Revision as of 08:45, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_125275.1
Species:	human
Chr:	chr10

Start:	48805060
End:	48805102
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2341456,EH38E1466526)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LRRC18
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	109154
Nearest PromoterID:	NM_001006939
Entrez ID:	474354
Nearest Unigene:	Hs.202438
Nearest Refseq:	NM_001006939
Nearest Ensembl:	ENSG00000165383
Gene Name:	LRRC18
Gene Alias:	UNQ933\|UNQ9338\|VKGE9338
Gene Type:	protein-coding
CpG%:	0.047619
GC%:	0.534884
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_020945, intron 25 of 61)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001006939
 |nearest_refseq=NM_001006939
+|nearest_transcripts=
 |nearest_unigene=Hs.202438
 |peak_score=1