TSS: Rfhg 126136.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF322669:4 MA558246:4 LF322667:-40 MA558244:-40 AK292809:-123 BC015043:-146 BC039600:-153 ENST00000513996.5:-154 ENST00000373700.9:-180 ENST00000412272.6:-180 ENST00000395198.7:-180 ENST00000473533.6:-180 ENST00000492996.6:-180 NM_022079.3:-180 NM_001278185.2:-180 NM_015601.4:-180 NM_001278186.2:-180 NM_001278187.2:-180 AY221963:-180 AY650033:-180 AY650032:-180 AK026808:-180 AY650034:-180 ENST00000395185.7:-198 ENST00000505760.5:236 LF384643:-243 MA620220:-243 | |||
|annotation=intron (NM_001278185, intron 1 of 23) | |annotation=intron (NM_001278185, intron 1 of 23) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_015601 | |nearest_promoter_id=NM_015601 | ||
|nearest_refseq=NM_015601 | |nearest_refseq=NM_015601 | ||
|nearest_transcripts=LF322667:-40 MA558244:-40 AK292809:-123 BC015043:-146 BC039600:-153 ENST00000513996.5:-154 ENST00000373700.9:-180 ENST00000412272.6:-180 ENST00000395198.7:-180 ENST00000473533.6:-180 ENST00000492996.6:-180 NM_022079.3:-180 NM_001278185.2:-180 NM_015601.4:-180 NM_001278186.2:-180 NM_001278187.2:-180 AY221963:-180 AY650033:-180 AY650032:-180 AK026808:-180 AY650034:-180 ENST00000395185.7:-198 ENST00000505760.5:236 LF384643:-243 MA620220:-243 | |||
|nearest_unigene=Hs.51891 | |nearest_unigene=Hs.51891 | ||
|peak_score=1 | |peak_score=1 |
Revision as of 09:22, 7 November 2024
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D2354680,EH38E1474299) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 185 |
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Nearest PromoterID: | NM_015601 |
Entrez ID: | 26091 |
Nearest Unigene: | Hs.51891 |
Nearest Refseq: | NM_015601 |
Nearest Ensembl: | ENSG00000148634 |
Gene Name: | HERC4 |
Gene Alias: | - |
Gene Type: | protein-coding |
CpG%: | 0.100000 |
GC%: | 0.727273 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "LF322667:-40 MA558244:-40 AK292809:-123 BC015043:-146 BC039600:-153 ENST00000513996.5:-154 ENST00000373700.9:-180 ENST00000412272.6:-180 ENST00000395198.7:-180 ENST00000473533.6:-180 ENST00000492996.6:-180 NM_022079.3:-180 NM_001278185.2:-180 NM_015601.4:-180 NM_001278186.2:-180 NM_001278187.2:-180 AY221963:-180 AY650033:-180 AY650032:-180 AK026808:-180 AY650034:-180 ENST00000395185.7:-198 ENST00000505760.5:236 LF384643:-243 MA620220:-243" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.