TSS: Rfhg 12617.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=dELS
|ccre_category=dELS
Line 25: Line 26:
|nearest_promoter_id=NM_053055
|nearest_promoter_id=NM_053055
|nearest_refseq=NM_053055
|nearest_refseq=NM_053055
|nearest_transcripts=
|nearest_unigene=Hs.164070
|nearest_unigene=Hs.164070
|peak_score=1
|peak_score=1

Revision as of 09:24, 7 November 2024

Basic information about the TSS

TSS ID:rfhg_12617.1
Species:human
Chr:chr1
Start:151941691
End:151941717
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:dELS (EH38D2222599,EH38E1384715)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:THEM4
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:-32193
    Nearest PromoterID:NM_053055
    Entrez ID:117145
    Nearest Unigene:Hs.164070
    Nearest Refseq:NM_053055
    Nearest Ensembl:ENSG00000159445
    Gene Name:THEM4
    Gene Alias:CTMP
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.370370
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_12617.1&oldid=3185051"