TSS: Rfhg 128627.1: Difference between revisions

Revision as of 11:04, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_128627.1
Species:	human
Chr:	chr10

Start:	95194233
End:	95194242
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2377688,EH38E1490175)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_207321.3:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000327739.7:-33 ENST00000341686.7:-33 AK126134:-33 ENST00000404473.6:235 ENST00000394005.3:235 BC104210:235 BC104211:235 BC112988:235 BC148184:235 view more...

Gene_name:	ACSM6
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	37
Nearest PromoterID:	NM_207321
Entrez ID:	142827
Nearest Unigene:	Hs.134229
Nearest Refseq:	NM_207321
Nearest Ensembl:	ENSG00000173124
Gene Name:	ACSM6
Gene Alias:	C10orf129\|bA310E22.3
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_207321.3:0 ENST00000327739.7:-33 ENST00000341686.7:-33 AK126134:-33 ENST00000404473.6:235 ENST00000394005.3:235 BC104210:235 BC104211:235 BC112988:235 BC148184:235
 |annotation=promoter-TSS (NM_207321)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_207321
 |nearest_refseq=NM_207321
+|nearest_transcripts=ENST00000327739.7:-33 ENST00000341686.7:-33 AK126134:-33 ENST00000404473.6:235 ENST00000394005.3:235 BC104210:235 BC104211:235 BC112988:235 BC148184:235
 |nearest_unigene=Hs.134229
 |peak_score=1