TSS: Rfhg 129558.1: Difference between revisions

Revision as of 11:44, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_129558.1
Species:	human
Chr:	chr10

Start:	102395600
End:	102395604
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2384245,EH38E1494960)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	NFKB2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-103
Nearest PromoterID:	NM_002502
Entrez ID:	4791
Nearest Unigene:	Hs.73090
Nearest Refseq:	NM_002502
Nearest Ensembl:	ENSG00000077150
Gene Name:	NFKB2
Gene Alias:	CVID10\|H2TF1\|LYT-10\|LYT10\|NF-kB2\|p100\|p49/p100\|p52
Gene Type:	protein-coding
CpG%:	0.250000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NM_002502)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_002502
 |nearest_refseq=NM_002502
+|nearest_transcripts=
 |nearest_unigene=Hs.73090
 |peak_score=1