TSS: Rfhg 130849.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000369144.8:0 ENST00000541549.2:0 NM_003750.4:0 LP895213:0 D50929:0 U58046:0 U78311:0 BC114429:0 JX312508:0 AK309542:0 AK307610:0 BC054342:0 BC064926:0 BC107776:0 BC033769:0 LF346032:28 MA581609:28 AB383762:30 AK302575:187
|annotation=promoter-TSS (NM_003750)
|annotation=promoter-TSS (NM_003750)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_003750
|nearest_promoter_id=NM_003750
|nearest_refseq=NM_003750
|nearest_refseq=NM_003750
|nearest_transcripts=LF346032:28 MA581609:28 AB383762:30 AK302575:187
|nearest_unigene=Hs.523299
|nearest_unigene=Hs.523299
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000369144.8 D50929 U58046 U78311 BC114429 JX312508 AK309542 AK307610 BC054342 BC064926 BC107776 BC033769
|transcript_name=ENST00000369144.8 ENST00000541549.2 NM_003750.4 LP895213 D50929 U58046 U78311 BC114429 JX312508 AK309542 AK307610 BC054342 BC064926 BC107776 BC033769
|tss_cluster_detected=12
|tss_cluster_detected=12
|tss_id=rfhg_130849.1
|tss_id=rfhg_130849.1

Revision as of 12:51, 7 November 2024

Basic information about the TSS

TSS ID:rfhg_130849.1
TSS ID(Version3):hg_232130.1
hg_111671.1
hg_111672.1
Species:human
Chr:chr10
Start:119080706
End:119080883
Strand:-
Source datasetsDRA000914|PRJDB5282|PRJNA4843412|DRA013844|PRJNA401781
|PRJNA615891|PRJNA548673|PRJNA597322
ProtocolCAGE|C1CAGE|NETCAGE|SLIC_CAGE|TIF-seq2|ReCappable-seq
|RAMPAGE|oligo_capping|STRIPE-seq
TSS cluster detected*12

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2398123,EH38E1504064)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000369144.8:0
ENST00000541549.2:0
NM_003750.4:0
LP895213:0
D50929:0
U58046:0
U78311:0
BC114429:0
JX312508:0
AK309542:0
AK307610:0
BC054342:0
BC064926:0
BC107776:0
BC033769:0
GeneID:8661
HGNC/MGI_ID:HGNC:3271 HGNC:6159
UniProt_ID:J9R021 Q05BS0 Q14152 Q24JU4 Q3B770 Q6P1R0 Q7Z5T5
Nearer transcript ids and distances:
  • LF346032:28
  • MA581609:28
  • AB383762:30
  • AK302575:187
view more...
Gene_name:EIF3A
Gene_symbol:EIF3A EIF6
Gene_synonyms:KIAA0139 TIF32 b(2)gcn eIF3-p170 eIF3-theta p27BBP
Gene_source:HGNC:3271 HGNC:6159



TATA-Box annotation

Distance to TSS:23
Nearest PromoterID:NM_003750
Entrez ID:8661
Nearest Unigene:Hs.523299
Nearest Refseq:NM_003750
Nearest Ensembl:ENSG00000107581
Gene Name:EIF3A
Gene Alias:EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185
Gene Type:protein-coding
CpG%:0.112994
GC%:0.730337
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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