TSS: Rfhg 131731.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000643056.1:0 ENST00000637128.2:0 ENST00000456581.1:0 NM_001355042.2:0 NR_034125.2:0 NR_149170.2:0 AK094118:0 ENST00000647406.1:6 EU250747:6 | |||
|annotation=promoter-TSS (NR_034125) | |annotation=promoter-TSS (NR_034125) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_149170 | |nearest_promoter_id=NR_149170 | ||
|nearest_refseq=NM_001355042 | |nearest_refseq=NM_001355042 | ||
|nearest_transcripts=ENST00000647406.1:6 EU250747:6 | |||
|nearest_unigene=Hs.127394 | |nearest_unigene=Hs.127394 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000643056.1 ENST00000637128.2 ENST00000456581.1 AK094118 | |transcript_name=ENST00000643056.1 ENST00000637128.2 ENST00000456581.1 NM_001355042.2 NR_034125.2 NR_149170.2 AK094118 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_131731.1 | |tss_id=rfhg_131731.1 | ||
Revision as of 13:28, 7 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2408720,EH38E1511212) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NR_149170 |
| Entrez ID: | 387723 |
| Nearest Unigene: | Hs.127394 |
| Nearest Refseq: | NM_001355042 |
| Nearest Ensembl: | ENSG00000237489 |
| Gene Name: | C10orf143 |
| Gene Alias: | LINC00959 |
| Gene Type: | protein-coding |
| CpG%: | 0.133333 |
| GC%: | 0.806452 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.