TSS: Rfhg 13216.1: Difference between revisions

Revision as of 13:48, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_13216.1
Species:	human
Chr:	chr1

Start:	154206359
End:	154206359
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2224296,EH38E1385975)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC127710:-5
GeneID:	388701
HGNC/MGI_ID:	HGNC:32305
UniProt_ID:
Nearer transcript ids and distances:	ENST00000368525.4:26 NM_001010979.3:26 HQ258701:51 KJ896198:51 BC130509:-64 view more...

Gene_name:	C1orf189
Gene_symbol:	CFAP141
Gene_synonyms:
Gene_source:	HGNC:32305

TATA-Box annotation

Distance to TSS:	-26
Nearest PromoterID:	NM_001010979
Entrez ID:	388701
Nearest Unigene:	Hs.104967
Nearest Refseq:	NM_001010979
Nearest Ensembl:	ENSG00000163263
Gene Name:	C1orf189
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=BC127710:-5 ENST00000368525.4:26 NM_001010979.3:26 HQ258701:51 KJ896198:51 BC130509:-64
 |annotation=promoter-TSS (NM_001010979)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001010979
 |nearest_refseq=NM_001010979
+|nearest_transcripts=ENST00000368525.4:26 NM_001010979.3:26 HQ258701:51 KJ896198:51 BC130509:-64
 |nearest_unigene=Hs.104967
 |peak_score=1