TSS: Rfhg 133403.1: Difference between revisions

Revision as of 14:50, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_133403.1
Species:	human
Chr:	chr11

Start:	3817422
End:	3817424
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2416682,EH38E1516398)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PGAP2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	8863
Nearest PromoterID:	NR_144428
Entrez ID:	27315
Nearest Unigene:	Hs.133968
Nearest Refseq:	NM_014489
Nearest Ensembl:	ENSG00000148985
Gene Name:	PGAP2
Gene Alias:	CWH43-N\|FRAG1\|HPMRS3\|MRT17\|MRT21
Gene Type:	protein-coding
CpG%:	0.500000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (NM_014489, exon 3 of 7)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_144428
 |nearest_refseq=NM_014489
+|nearest_transcripts=
 |nearest_unigene=Hs.133968
 |peak_score=1