TSS: Rfhg 136769.1: Difference between revisions

Revision as of 17:46, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_136769.1
Species:	human
Chr:	chr11

Start:	47594699
End:	47594705
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2450464,EH38E1538374)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF211822:-158 MA447399:-158
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000302514.4:288 NM_031909.3:288 AF329838:348 LF212900:452 MA448477:452 view more...

Gene_name:	C1QTNF4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-291
Nearest PromoterID:	NM_031909
Entrez ID:	114900
Nearest Unigene:	Hs.662633
Nearest Refseq:	NM_031909
Nearest Ensembl:	ENSG00000172247
Gene Name:	C1QTNF4
Gene Alias:	CTRP4\|ZACRP4
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF211822:-158 MA447399:-158 ENST00000302514.4:288 NM_031909.3:288 AF329838:348 LF212900:452 MA448477:452
 |annotation=promoter-TSS (NM_031909)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_031909
 |nearest_refseq=NM_031909
+|nearest_transcripts=ENST00000302514.4:288 NM_031909.3:288 AF329838:348 LF212900:452 MA448477:452
 |nearest_unigene=Hs.662633
 |peak_score=1