TSS: Rfhg 138851.1: Difference between revisions

Revision as of 19:35, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_138851.1
Species:	human
Chr:	chr11

Start:	65215475
End:	65215475
Strand:	-

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2459368,EH38E1544862)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SLC22A20P
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1635
Nearest PromoterID:	NR_033396
Entrez ID:	440044
Nearest Unigene:	Hs.532372
Nearest Refseq:	NM_001004326
Nearest Ensembl:	ENSG00000197847
Gene Name:	SLC22A20P
Gene Alias:	Oat6\|SLC22A20
Gene Type:	pseudo
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NR_033396, intron 2 of 9)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_033396
 |nearest_refseq=NM_001004326
+|nearest_transcripts=
 |nearest_unigene=Hs.532372
 |peak_score=1