TSS: Rfhg 141412.1: Difference between revisions

Revision as of 21:53, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_141412.1
Species:	human
Chr:	chr11

Start:	78079682
End:	78079692
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2472970,EH38E1555083)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF369000:47 MA604577:47
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	CR533448:-52 KJ897230:-53 AB528753:-54 AM392713:-56 ENST00000612612.5:-81 ENST00000614236.2:-81 AK022785:-102 AF087659:-116 AF369951:-124 ENST00000534029.5:-127 ENST00000525085.1:-127 ENST00000527806.1:-149 AK098173:-149 ENST00000528251.1:-152 AL050278:-157 AF369952:-162 AK023013:-168 ENST00000528164.1:-169 ENST00000281031.5:-170 NM_001203260.2:-170 NM_001203261.2:-170 NM_001203262.2:-170 NM_004549.6:-170 NM_001204054.3:-170 NM_001204055.2:-170 AF070652:-170 ENST00000530054.1:-173 BC007323:-193 view more...

Gene_name:	NDUFC2-KCTD14
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	175
Nearest PromoterID:	NM_001203261
Entrez ID:	100532726
Nearest Unigene:	Hs.407860
Nearest Refseq:	NM_001203260
Nearest Ensembl:	ENSG00000259112
Gene Name:	NDUFC2-KCTD14
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.818182
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "CR533448:-52 KJ897230:-53 AB528753:-54 AM392713:-56 ENST00000612612.5:-81 ENST00000614236.2:-81 AK022785:-102 AF087659:-116 AF369951:-124 ENST00000534029.5:-127 ENST00000525085.1:-127 ENST00000527806.1:-149 AK098173:-149 ENST00000528251.1:-152 AL050278:-157 AF369952:-162 AK023013:-168 ENST00000528164.1:-169 ENST00000281031.5:-170 NM_001203260.2:-170 NM_001203261.2:-170 NM_001203262.2:-170 NM_004549.6:-170 NM_001204054.3:-170 NM_001204055.2:-170 AF070652:-170 ENST00000530054.1:-173 BC007323:-193" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF369000:47 MA604577:47 CR533448:-52 KJ897230:-53 AB528753:-54 AM392713:-56 ENST00000612612.5:-81 ENST00000614236.2:-81 AK022785:-102 AF087659:-116 AF369951:-124 ENST00000534029.5:-127 ENST00000525085.1:-127 ENST00000527806.1:-149 AK098173:-149 ENST00000528251.1:-152 AL050278:-157 AF369952:-162 AK023013:-168 ENST00000528164.1:-169 ENST00000281031.5:-170 NM_001203260.2:-170 NM_001203261.2:-170 NM_001203262.2:-170 NM_004549.6:-170 NM_001204054.3:-170 NM_001204055.2:-170 AF070652:-170 ENST00000530054.1:-173 BC007323:-193
 |annotation=exon (NM_004549, exon 1 of 3)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001203261
 |nearest_refseq=NM_001203260
+|nearest_transcripts=CR533448:-52 KJ897230:-53 AB528753:-54 AM392713:-56 ENST00000612612.5:-81 ENST00000614236.2:-81 AK022785:-102 AF087659:-116 AF369951:-124 ENST00000534029.5:-127 ENST00000525085.1:-127 ENST00000527806.1:-149 AK098173:-149 ENST00000528251.1:-152 AL050278:-157 AF369952:-162 AK023013:-168 ENST00000528164.1:-169 ENST00000281031.5:-170 NM_001203260.2:-170 NM_001203261.2:-170 NM_001203262.2:-170 NM_004549.6:-170 NM_001204054.3:-170 NM_001204055.2:-170 AF070652:-170 ENST00000530054.1:-173 BC007323:-193
 |nearest_unigene=Hs.407860
 |peak_score=1