TSS: Rfhg 142139.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000384574.1:1 ENST00000534079.5:-1 NR_002920.1:1 AJ609454:1 LP896609:1 ENST00000529900.1:232 AK057183:-340 NR_003026.1:367 | |||
|annotation=promoter-TSS (NR_003036) | |annotation=promoter-TSS (NR_003036) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NR_002920 | |nearest_promoter_id=NR_002920 | ||
|nearest_refseq=NR_002920 | |nearest_refseq=NR_002920 | ||
|nearest_transcripts=LP896609:1 ENST00000529900.1:232 AK057183:-340 NR_003026.1:367 | |||
|nearest_unigene=Hs.741060 | |nearest_unigene=Hs.741060 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000384574.1 AJ609454 | |transcript_name=ENST00000384574.1 NR_002920.1 AJ609454 LP896609 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_142139.1 | |tss_id=rfhg_142139.1 | ||
Revision as of 22:24, 7 November 2024
Basic information about the TSS
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| Source datasets | PRJNA401781 | |||||||||||||
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| Protocol | oligo_capping | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2483995,EH38E1561550) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NR_002920 |
| Entrez ID: | 654320 |
| Nearest Unigene: | Hs.741060 |
| Nearest Refseq: | NR_002920 |
| Nearest Ensembl: | ENSG00000207304 |
| Gene Name: | SNORA8 |
| Gene Alias: | ACA8 |
| Gene Type: | snoRNA |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.