TSS: Rfhg 14324.1: Difference between revisions

Revision as of 23:21, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_14324.1
Species:	human
Chr:	chr1

Start:	158331336
End:	158331354
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2228459,EH38E1389361)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CD1B
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	186
Nearest PromoterID:	NM_001764
Entrez ID:	910
Nearest Unigene:	Hs.1310
Nearest Refseq:	NM_001764
Nearest Ensembl:	ENSG00000158485
Gene Name:	CD1B
Gene Alias:	CD1\|CD1A\|R1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.684211
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001764, intron 1 of 5)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001764
 |nearest_refseq=NM_001764
+|nearest_transcripts=
 |nearest_unigene=Hs.1310
 |peak_score=1