TSS: Rfhg 143827.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=MA868875:0 LY591287:0 MA868874:-4 LY591286:-4 MA878190:-19 LY600602:-19 MA868873:-24 LY591285:-24 MA868876:30 LY591288:30 MA868877:31 LY591289:31 MA868878:41 LY591290:41 MA878189:-49 LY600601:-49 MA868872:-54 LY591284:-54 MA878188:-62 LY600600:-62 MA878187:-63 LY600599:-63 MA868871:-67 LY591283:-67 MA868870:-68 LY591282:-68 MA878186:-70 LY600598:-70 MA878185:-75 MA868869:-75 LY600597:-75 LY591281:-75 MA868879:76 LY591291:76 MA868868:-80 LY591280:-80 MA868880:133 LY591292:133 MA868881:204 LY591293:204 MA868882:221 LY591294:221 MA868883:256 LY591295:256 MA868884:365 LY591296:365 MA868885:366 LY591297:366 MA868886:367 LY591298:367 MA868887:371 LY591299:371 MA868888:376 LY591300:376 MA868889:377 LY591301:377 MA868890:393 LY591302:393 MA868891:417 LY591303:417
|annotation=3' UTR (NM_000733, exon 9 of 9)
|annotation=3' UTR (NM_000733, exon 9 of 9)
|ccre_category=dELS
|ccre_category=dELS
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|nearest_promoter_id=NM_000733
|nearest_promoter_id=NM_000733
|nearest_refseq=NM_000733
|nearest_refseq=NM_000733
|nearest_transcripts=MA868874:-4 LY591286:-4 MA878190:-19 LY600602:-19 MA868873:-24 LY591285:-24 MA868876:30 LY591288:30 MA868877:31 LY591289:31 MA868878:41 LY591290:41 MA878189:-49 LY600601:-49 MA868872:-54 LY591284:-54 MA878188:-62 LY600600:-62 MA878187:-63 LY600599:-63 MA868871:-67 LY591283:-67 MA868870:-68 LY591282:-68 MA878186:-70 LY600598:-70 MA878185:-75 MA868869:-75 LY600597:-75 LY591281:-75 MA868879:76 LY591291:76 MA868868:-80 LY591280:-80 MA868880:133 LY591292:133 MA868881:204 LY591293:204 MA868882:221 LY591294:221 MA868883:256 LY591295:256 MA868884:365 LY591296:365 MA868885:366 LY591297:366 MA868886:367 LY591298:367 MA868887:371 LY591299:371 MA868888:376 LY591300:376 MA868889:377 LY591301:377 MA868890:393 LY591302:393 MA868891:417 LY591303:417
|nearest_unigene=Hs.3003
|nearest_unigene=Hs.3003
|peak_score=1
|peak_score=1

Revision as of 23:51, 7 November 2024

Basic information about the TSS

TSS ID:rfhg_143827.1
Species:human
Chr:chr11
Start:118315547
End:118315557
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:dELS,CTCF-bound (EH38D2503380,EH38E1574091)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:MA868875:0
LY591287:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • MA868874:-4
  • LY591286:-4
  • MA878190:-19
  • LY600602:-19
  • MA868873:-24
  • LY591285:-24
  • MA868876:30
  • LY591288:30
  • MA868877:31
  • LY591289:31
  • MA868878:41
  • LY591290:41
  • MA878189:-49
  • LY600601:-49
  • MA868872:-54
  • LY591284:-54
  • MA878188:-62
  • LY600600:-62
  • MA878187:-63
  • LY600599:-63
  • MA868871:-67
  • LY591283:-67
  • MA868870:-68
  • LY591282:-68
  • MA878186:-70
  • LY600598:-70
  • MA878185:-75
  • MA868869:-75
  • LY600597:-75
  • LY591281:-75
  • MA868879:76
  • LY591291:76
  • MA868868:-80
  • LY591280:-80
  • MA868880:133
  • LY591292:133
  • MA868881:204
  • LY591293:204
  • MA868882:221
  • LY591294:221
  • MA868883:256
  • LY591295:256
  • MA868884:365
  • LY591296:365
  • MA868885:366
  • LY591297:366
  • MA868886:367
  • LY591298:367
  • MA868887:371
  • LY591299:371
  • MA868888:376
  • LY591300:376
  • MA868889:377
  • LY591301:377
  • MA868890:393
  • LY591302:393
  • MA868891:417
  • LY591303:417
view more...
Gene_name:CD3E
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:10972
Nearest PromoterID:NM_000733
Entrez ID:916
Nearest Unigene:Hs.3003
Nearest Refseq:NM_000733
Nearest Ensembl:ENSG00000198851
Gene Name:CD3E
Gene Alias:IMD18|T3E|TCRE
Gene Type:protein-coding
CpG%:0.000000
GC%:0.545455
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "MA868874:-4 LY591286:-4 MA878190:-19 LY600602:-19 MA868873:-24 LY591285:-24 MA868876:30 LY591288:30 MA868877:31 LY591289:31 MA868878:41 LY591290:41 MA878189:-49 LY600601:-49 MA868872:-54 LY591284:-54 MA878188:-62 LY600600:-62 MA878187:-63 LY600599:-63 MA868871:-67 LY591283:-67 MA868870:-68 LY591282:-68 MA878186:-70 LY600598:-70 MA878185:-75 MA868869:-75 LY600597:-75 LY591281:-75 MA868879:76 LY591291:76 MA868868:-80 LY591280:-80 MA868880:133 LY591292:133 MA868881:204 LY591293:204 MA868882:221 LY591294:221 MA868883:256 LY591295:256 MA868884:365 LY591296:365 MA868885:366 LY591297:366 MA868886:367 LY591298:367 MA868887:371 LY591299:371 MA868888:376 LY591300:376 MA868889:377 LY591301:377 MA868890:393 LY591302:393 MA868891:417 LY591303:417" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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