TSS: Rfhg 145793.1: Difference between revisions

Revision as of 01:22, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_145793.1
Species:	human
Chr:	chr12

Start:	2296203
End:	2296217
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2521622,EH38E1586974)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CACNA1C-IT3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	26434
Nearest PromoterID:	NR_046769
Entrez ID:	100874370
Nearest Unigene:	Hs.653548
Nearest Refseq:	NR_046769
Nearest Ensembl:
Gene Name:	CACNA1C-IT3
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_199460, intron 3 of 49).2
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_046769
 |nearest_refseq=NR_046769
+|nearest_transcripts=
 |nearest_unigene=Hs.653548
 |peak_score=1