TSS: Rfhg 147359.1: Difference between revisions

Revision as of 02:40, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_147359.1
Species:	human
Chr:	chr12

Start:	10723045
End:	10723088
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2529419,EH38E1592535)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF366096:-453 MA601673:-453
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	YBX3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	257
Nearest PromoterID:	NM_001145426
Entrez ID:	8531
Nearest Unigene:	Hs.221889
Nearest Refseq:	NM_003651
Nearest Ensembl:	ENSG00000060138
Gene Name:	YBX3
Gene Alias:	CSDA\|CSDA1\|DBPA\|ZONAB
Gene Type:	protein-coding
CpG%:	0.093023
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF366096:-453 MA601673:-453
 |annotation=exon (NM_003651, exon 1 of 10)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001145426
 |nearest_refseq=NM_003651
+|nearest_transcripts=
 |nearest_unigene=Hs.221889
 |peak_score=1