TSS: Rfhg 147985.1: Difference between revisions

Revision as of 03:04, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_147985.1
Species:	human
Chr:	chr12

Start:	14424234
End:	14424270
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2532597,EH38E1594875)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF366214:-36 MA601791:-36
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AK074868:138 LF366213:-165 MA601790:-165 LF366212:-311 MA601789:-311 AF425650:-318 KJ902867:-319 ENST00000540793.5:-473 AY337596:-473 view more...

Gene_name:	ATF7IP
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	38971
Nearest PromoterID:	NM_181352
Entrez ID:	55729
Nearest Unigene:	Hs.504856
Nearest Refseq:	NM_018179
Nearest Ensembl:	ENSG00000171681
Gene Name:	ATF7IP
Gene Alias:	AM\|ATF-IP\|MCAF\|MCAF1\|p621
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.324324
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF366214:-36 MA601791:-36 AK074868:138 LF366213:-165 MA601790:-165 LF366212:-311 MA601789:-311 AF425650:-318 KJ902867:-319 ENST00000540793.5:-473 AY337596:-473
 |annotation=exon (NM_018179, exon 2 of 15)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_181352
 |nearest_refseq=NM_018179
+|nearest_transcripts=AK074868:138 LF366213:-165 MA601790:-165 LF366212:-311 MA601789:-311 AF425650:-318 KJ902867:-319 ENST00000540793.5:-473 AY337596:-473
 |nearest_unigene=Hs.504856
 |peak_score=1