TSS: Rfhg 152095.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000384304.1:-1 NR_002737.1:-1 LP895872:-1 LP896816:-1 X96659:-1 ENST00000548474.2:-179 DQ403107:-188 | |||
|annotation=promoter-TSS (NR_002737) | |annotation=promoter-TSS (NR_002737) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NR_002737 | |nearest_promoter_id=NR_002737 | ||
|nearest_refseq=NR_002737 | |nearest_refseq=NR_002737 | ||
|nearest_transcripts=ENST00000548474.2:-179 DQ403107:-188 | |||
|nearest_unigene= | |nearest_unigene= | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000384304.1 X96659 | |transcript_name=ENST00000384304.1 NR_002737.1 LP895872 LP896816 X96659 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfhg_152095.1 | |tss_id=rfhg_152095.1 | ||
Revision as of 06:17, 8 November 2024
Basic information about the TSS
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| Source datasets | PRJNA548673 | |||||||||||||
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| Protocol | CAGE|ReCappable-seq | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2563915,EH38E1615894) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NR_002737 |
| Entrez ID: | 26789 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_002737 |
| Nearest Ensembl: | ENSG00000207031 |
| Gene Name: | SNORD59A |
| Gene Alias: | RNU59|U59 |
| Gene Type: | snoRNA |
| CpG%: | 0.000000 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.