TSS: Rfhg 153603.1: Difference between revisions

Revision as of 07:27, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_153603.1
Species:	human
Chr:	chr12

Start:	71948052
End:	71948094
Strand:	+

Source datasets

FANTOM5|DRA000914

Protocol

CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2576362,EH38E1624282)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TPH2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	9228
Nearest PromoterID:	NM_173353
Entrez ID:	121278
Nearest Unigene:	Hs.736576
Nearest Refseq:	NM_173353
Nearest Ensembl:	ENSG00000139287
Gene Name:	TPH2
Gene Alias:	ADHD7\|NTPH
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.372093
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_173353, intron 4 of 10)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_173353
 |nearest_refseq=NM_173353
+|nearest_transcripts=
 |nearest_unigene=Hs.736576
 |peak_score=1