TSS: Rfhg 155489.1: Difference between revisions

Revision as of 08:46, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_155489.1
Species:	human
Chr:	chr12

Start:	102062128
End:	102062137
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2598714,EH38E1638204)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001301107.1:4
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000539515.5:-12 ENST00000545679.5:49 ENST00000544341.5:55 AF151874:59 AF155655:59 AK223339:70 AK314970:86 ENST00000535501.5:94 ENST00000500685.6:116 ENST00000540536.5:128 BC010889:133 ENST00000240079.11:137 ENST00000326351.11:137 NM_016053.4:137 ENST00000541569.5:150 ENST00000538761.5:154 ENST00000536930.1:154 CR457171:166 HQ448683:166 KJ898801:166 AB587430:166 CU679841:166 view more...

Gene_name:	WASHC3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-8
Nearest PromoterID:	NM_001301107
Entrez ID:	51019
Nearest Unigene:	Hs.405692
Nearest Refseq:	NM_016053
Nearest Ensembl:	ENSG00000120860
Gene Name:	WASHC3
Gene Alias:	CCDC53\|CGI-116
Gene Type:	protein-coding
CpG%:	0.111111
GC%:	0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "ENST00000539515.5:-12 ENST00000545679.5:49 ENST00000544341.5:55 AF151874:59 AF155655:59 AK223339:70 AK314970:86 ENST00000535501.5:94 ENST00000500685.6:116 ENST00000540536.5:128 BC010889:133 ENST00000240079.11:137 ENST00000326351.11:137 NM_016053.4:137 ENST00000541569.5:150 ENST00000538761.5:154 ENST00000536930.1:154 CR457171:166 HQ448683:166 KJ898801:166 AB587430:166 CU679841:166" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001301107.1:4 ENST00000539515.5:-12 ENST00000545679.5:49 ENST00000544341.5:55 AF151874:59 AF155655:59 AK223339:70 AK314970:86 ENST00000535501.5:94 ENST00000500685.6:116 ENST00000540536.5:128 BC010889:133 ENST00000240079.11:137 ENST00000326351.11:137 NM_016053.4:137 ENST00000541569.5:150 ENST00000538761.5:154 ENST00000536930.1:154 CR457171:166 HQ448683:166 KJ898801:166 AB587430:166 CU679841:166
 |annotation=promoter-TSS (NM_001301107)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001301107
 |nearest_refseq=NM_016053
+|nearest_transcripts=ENST00000539515.5:-12 ENST00000545679.5:49 ENST00000544341.5:55 AF151874:59 AF155655:59 AK223339:70 AK314970:86 ENST00000535501.5:94 ENST00000500685.6:116 ENST00000540536.5:128 BC010889:133 ENST00000240079.11:137 ENST00000326351.11:137 NM_016053.4:137 ENST00000541569.5:150 ENST00000538761.5:154 ENST00000536930.1:154 CR457171:166 HQ448683:166 KJ898801:166 AB587430:166 CU679841:166
 |nearest_unigene=Hs.405692
 |peak_score=1