TSS: Rfhg 155550.1: Difference between revisions

Revision as of 08:50, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_155550.1
Species:	human
Chr:	chr12

Start:	103151816
End:	103151836
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000652849.1:0 ENST00000658970.1:0
GeneID:	101929058
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000547418.5:6 NR_126333.1:6 ENST00000552759.1:19 view more...

Gene_name:	LOC101929058
Gene_symbol:	C12orf42-AS1
Gene_synonyms:
Gene_source:	EntrezGene:101929058

TATA-Box annotation

Distance to TSS:	-16
Nearest PromoterID:	NR_126333
Entrez ID:	101929058
Nearest Unigene:	Hs.171310
Nearest Refseq:	NR_126333
Nearest Ensembl:	ENSG00000257860
Gene Name:	LOC101929058
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.333333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000652849.1:0 ENST00000658970.1:0 ENST00000547418.5:6 NR_126333.1:6 ENST00000552759.1:19
 |annotation=promoter-TSS (NR_126333)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_126333
 |nearest_refseq=NR_126333
+|nearest_transcripts=ENST00000547418.5:6 NR_126333.1:6 ENST00000552759.1:19
 |nearest_unigene=Hs.171310
 |peak_score=1