TSS: Rfhg 157633.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000528880.3:0 NM_006018.3:0 BC047891:0 D10923:0 LP895274:0 AK313212:0 BC038955:9 AK290930:18 | |||
|annotation=promoter-TSS (NM_006018) | |annotation=promoter-TSS (NM_006018) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_006018 | |nearest_promoter_id=NM_006018 | ||
|nearest_refseq=NM_006018 | |nearest_refseq=NM_006018 | ||
|nearest_transcripts=BC038955:9 AK290930:18 | |||
|nearest_unigene=Hs.458425 | |nearest_unigene=Hs.458425 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000528880.3 BC047891 D10923 AK313212 | |transcript_name=ENST00000528880.3 NM_006018.3 BC047891 D10923 LP895274 AK313212 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfhg_157633.1 | |tss_id=rfhg_157633.1 | ||
Revision as of 11:34, 8 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
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| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2617644,EH38E1651771) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NM_006018 |
| Entrez ID: | 8843 |
| Nearest Unigene: | Hs.458425 |
| Nearest Refseq: | NM_006018 |
| Nearest Ensembl: | ENSG00000255398 |
| Gene Name: | HCAR3 |
| Gene Alias: | GPR109B|HCA3|HM74|PUMAG|Puma-g |
| Gene Type: | protein-coding |
| CpG%: | 0.076923 |
| GC%: | 0.518519 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.