TSS: Rfhg 159923.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=NM_001370329.1:0 NM_001370330.1:0 ENST00000405737.2:-37 BX640798:414
|annotation=promoter-TSS (NM_007187)
|annotation=promoter-TSS (NM_007187)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_001370329
|nearest_promoter_id=NM_001370329
|nearest_refseq=NM_172373
|nearest_refseq=NM_172373
|nearest_transcripts=ENST00000405737.2:-37 BX640798:414
|nearest_unigene=Hs.135646
|nearest_unigene=Hs.135646
|peak_score=1
|peak_score=1

Revision as of 12:17, 8 November 2024

Basic information about the TSS


TSS ID:rfhg_159923.1
TSS ID(Version3):hg_136954.1
hg_136955.1
Species:human
Chr:chr13
Start:41061351
End:41061403
Strand:-
Source datasetsFANTOM5|PRJNA4843412|PRJNA615891|PRJNA548673|DRA013844
ProtocolCAGE|NETCAGE|SLIC_CAGE|ReCappable-seq
TSS cluster detected*6

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D2645660,EH38E1670598)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:NM_001370329.1:0
NM_001370330.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000405737.2:-37
  • BX640798:414
view more...
Gene_name:ELF1
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:9
Nearest PromoterID:NM_001370329
Entrez ID:1997
Nearest Unigene:Hs.135646
Nearest Refseq:NM_172373
Nearest Ensembl:ENSG00000120690
Gene Name:ELF1
Gene Alias:EFTUD1|RIA1
Gene Type:protein-coding
CpG%:0.096154
GC%:0.641509
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):