TSS: Rfhg 159923.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001370329.1:0 NM_001370330.1:0 ENST00000405737.2:-37 BX640798:414 | |||
|annotation=promoter-TSS (NM_007187) | |annotation=promoter-TSS (NM_007187) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_001370329 | |nearest_promoter_id=NM_001370329 | ||
|nearest_refseq=NM_172373 | |nearest_refseq=NM_172373 | ||
|nearest_transcripts=ENST00000405737.2:-37 BX640798:414 | |||
|nearest_unigene=Hs.135646 | |nearest_unigene=Hs.135646 | ||
|peak_score=1 | |peak_score=1 |
Revision as of 12:17, 8 November 2024
Basic information about the TSS
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Source datasets | FANTOM5|PRJNA4843412|PRJNA615891|PRJNA548673|DRA013844 | |||||||||||||||
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Protocol | CAGE|NETCAGE|SLIC_CAGE|ReCappable-seq | |||||||||||||||
TSS cluster detected* | 6 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D2645660,EH38E1670598) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 9 |
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Nearest PromoterID: | NM_001370329 |
Entrez ID: | 1997 |
Nearest Unigene: | Hs.135646 |
Nearest Refseq: | NM_172373 |
Nearest Ensembl: | ENSG00000120690 |
Gene Name: | ELF1 |
Gene Alias: | EFTUD1|RIA1 |
Gene Type: | protein-coding |
CpG%: | 0.096154 |
GC%: | 0.641509 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |