TSS: Rfhg 161713.1: Difference between revisions

Revision as of 12:50, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_161713.1
Species:	human
Chr:	chr13

Start:	87673399
End:	87673402
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2675666,EH38E1687580)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SLITRK5
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	785
Nearest PromoterID:	NM_015567
Entrez ID:	26050
Nearest Unigene:	Hs.591208
Nearest Refseq:	NM_015567
Nearest Ensembl:	ENSG00000165300
Gene Name:	SLITRK5
Gene Alias:	LRRC11\|bA364G4.2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_015567, intron 1 of 1)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_015567
 |nearest_refseq=NM_015567
+|nearest_transcripts=
 |nearest_unigene=Hs.591208
 |peak_score=1