TSS: Rfhg 162112.1: Difference between revisions

Revision as of 12:58, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_162112.1
Species:	human
Chr:	chr13

Start:	98930198
End:	98930205
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2683576,EH38E1692081)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	DOCK9
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	47863
Nearest PromoterID:	NM_001366683
Entrez ID:	23348
Nearest Unigene:	Hs.596105
Nearest Refseq:	NM_015296
Nearest Ensembl:	ENSG00000088387
Gene Name:	DOCK9
Gene Alias:	ZIZ1\|ZIZIMIN1
Gene Type:	protein-coding
CpG%:	0.142857
GC%:	0.625000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (NM_001130049, exon 3 of 33)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001366683
 |nearest_refseq=NM_015296
+|nearest_transcripts=
 |nearest_unigene=Hs.596105
 |peak_score=1