TSS: Rfhg 162434.1: Difference between revisions

Revision as of 13:03, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_162434.1
Species:	human
Chr:	chr13

Start:	102799199
End:	102799211
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2686970,EH38E1694471)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK304391:0
GeneID:	54841
HGNC/MGI_ID:	HGNC:16034
UniProt_ID:
Nearer transcript ids and distances:	ENST00000448849.3:-16 ENST00000651048.1:-16 AK290658:-19 ENST00000651855.1:-59 ENST00000652006.1:-61 ENST00000651949.1:-80 ENST00000651008.1:-80 ENST00000257336.6:-80 NM_001159596.2:-80 NM_017693.4:-80 BC112339:83 ENST00000639435.1:-89 ENST00000652766.1:106 ENST00000639132.1:111 AF411385:-150 ENST00000652643.1:203 view more...

Gene_name:	BIVM
Gene_symbol:	BIVM
Gene_synonyms:	FLJ20159
Gene_source:	HGNC:16034

TATA-Box annotation

Distance to TSS:	86
Nearest PromoterID:	NM_001159596
Entrez ID:	54841
Nearest Unigene:	Hs.288809
Nearest Refseq:	NM_017693
Nearest Ensembl:	ENSG00000134897
Gene Name:	BIVM
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.083333
GC%:	0.615385
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

Property "Nearest transcripts" (as page type) with input value "ENST00000448849.3:-16 ENST00000651048.1:-16 AK290658:-19 ENST00000651855.1:-59 ENST00000652006.1:-61 ENST00000651949.1:-80 ENST00000651008.1:-80 ENST00000257336.6:-80 NM_001159596.2:-80 NM_017693.4:-80 BC112339:83 ENST00000639435.1:-89 ENST00000652766.1:106 ENST00000639132.1:111 AF411385:-150 ENST00000652643.1:203" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK304391:0 ENST00000448849.3:-16 ENST00000651048.1:-16 AK290658:-19 ENST00000651855.1:-59 ENST00000652006.1:-61 ENST00000651949.1:-80 ENST00000651008.1:-80 ENST00000257336.6:-80 NM_001159596.2:-80 NM_017693.4:-80 BC112339:83 ENST00000639435.1:-89 ENST00000652766.1:106 ENST00000639132.1:111 AF411385:-150 ENST00000652643.1:203
 |annotation=promoter-TSS (NM_017693)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001159596
 |nearest_refseq=NM_017693
+|nearest_transcripts=ENST00000448849.3:-16 ENST00000651048.1:-16 AK290658:-19 ENST00000651855.1:-59 ENST00000652006.1:-61 ENST00000651949.1:-80 ENST00000651008.1:-80 ENST00000257336.6:-80 NM_001159596.2:-80 NM_017693.4:-80 BC112339:83 ENST00000639435.1:-89 ENST00000652766.1:106 ENST00000639132.1:111 AF411385:-150 ENST00000652643.1:203
 |nearest_unigene=Hs.288809
 |peak_score=1