TSS: Rfhg 163014.1: Difference between revisions

Revision as of 13:14, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_163014.1
Species:	human
Chr:	chr13

Start:	113297725
End:	113297769
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2695943,EH38E1699836)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF371303:302 MA606880:302
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LAMP1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	508
Nearest PromoterID:	NM_005561
Entrez ID:	3916
Nearest Unigene:	Hs.494419
Nearest Refseq:	NM_005561
Nearest Ensembl:	ENSG00000185896
Gene Name:	LAMP1
Gene Alias:	CD107a\|LAMPA\|LGP120
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.466667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF371303:302 MA606880:302
 |annotation=intron (NM_005561, intron 1 of 8)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_005561
 |nearest_refseq=NM_005561
+|nearest_transcripts=
 |nearest_unigene=Hs.494419
 |peak_score=1