TSS: Rfhg 163661.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=AB749858:0 AB977189:0 AB977156:-1 AB977393:9 AB977084:-10 AB977279:-10 AB977356:10 ENST00000390437.2:-11 AB976960:-11 AB749868:-11 AB306116:-11 AB306068:-11 AB976893:-11 AB305730:-11 AB306105:-11 AB976826:-11 AB977466:-11 AB976737:-11 AB977366:-11 AB976861:-11 AB976968:-11 AB977037:-11 AB977062:-11 AB977078:-11 AB977090:-11 AB977347:-11 AB977227:-11 AK301287:-11 AB977290:-12 AB977289:13 AB977226:13 AB977348:14 AB305679:16 AB305705:-20 AB977111:21 AB305739:22 AB976910:33 AB976779:-35 AB305703:39 AB360829:47 AF020651:56 S60781:68 M81774:83 DQ286431:86 GU122926:86 KT207830:86 X58746:89 AB977395:336 AB306021:356 AB977277:365 M17652:367 M17653:367 X04940:374 M27369:374 X04946:374 AF532850:382 AF532854:382 AF532847:382 AF532856:382 AF532838:382 AF532851:382 AF532837:382 AF532849:383 AY135844:383 EU340840:383 X92883:384 X92766:384 X92783:384 AF532842:384 AF532843:387 AF532852:387 AF532840:387 AF532839:387 AF532844:387 AY135853:387 AF532841:389 AF532845:389 AY135839:389 AY135835:389 AY135838:389 AY135843:389 AY135846:389 AY135842:389 AY135832:389 AY135836:389 AF532848:389 AF532853:389 AY135837:389 AY135851:389 AY135849:389 AY135833:389 AY135852:389 AY135841:389 AY135850:389 AY135840:391 AY135847:394 AB977137:394 AB977243:394 AB976957:394 AB976929:394 AB976867:394 AB977473:394 AB976827:394 AB976946:394 S82064:401 AY135834:402 AB305742:404 AY247836:407 KX074530:413 KX075470:413 KX075637:413 KX076175:413 KX076587:413 KX074975:413 KX076391:413 KX076457:413 KX076648:413 KX075747:413 KX076820:413 KX075854:413 KX076027:413 KX075082:413 KX074529:413 KX076558:413 KX074640:413 AF327017:416 S82066:425 KX074637:428 AY196320:430 KX077021:432 AY135848:433 KX076122:440 U40464:441 KX075797:453 KX076588:470 KX076111:470 KX074684:470 AF532846:473 AF020639:480 U40776:496
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001317107
|nearest_promoter_id=NM_001317107
|nearest_refseq=NM_001317107
|nearest_refseq=NM_001317107
|nearest_transcripts=AB977156:-1 AB977393:9 AB977084:-10 AB977279:-10 AB977356:10 ENST00000390437.2:-11 AB976960:-11 AB749868:-11 AB306116:-11 AB306068:-11 AB976893:-11 AB305730:-11 AB306105:-11 AB976826:-11 AB977466:-11 AB976737:-11 AB977366:-11 AB976861:-11 AB976968:-11 AB977037:-11 AB977062:-11 AB977078:-11 AB977090:-11 AB977347:-11 AB977227:-11 AK301287:-11 AB977290:-12 AB977289:13 AB977226:13 AB977348:14 AB305679:16 AB305705:-20 AB977111:21 AB305739:22 AB976910:33 AB976779:-35 AB305703:39 AB360829:47 AF020651:56 S60781:68 M81774:83 DQ286431:86 GU122926:86 KT207830:86 X58746:89 AB977395:336 AB306021:356 AB977277:365 M17652:367 M17653:367 X04940:374 M27369:374 X04946:374 AF532850:382 AF532854:382 AF532847:382 AF532856:382 AF532838:382 AF532851:382 AF532837:382 AF532849:383 AY135844:383 EU340840:383 X92883:384 X92766:384 X92783:384 AF532842:384 AF532843:387 AF532852:387 AF532840:387 AF532839:387 AF532844:387 AY135853:387 AF532841:389 AF532845:389 AY135839:389 AY135835:389 AY135838:389 AY135843:389 AY135846:389 AY135842:389 AY135832:389 AY135836:389 AF532848:389 AF532853:389 AY135837:389 AY135851:389 AY135849:389 AY135833:389 AY135852:389 AY135841:389 AY135850:389 AY135840:391 AY135847:394 AB977137:394 AB977243:394 AB976957:394 AB976929:394 AB976867:394 AB977473:394 AB976827:394 AB976946:394 S82064:401 AY135834:402 AB305742:404 AY247836:407 KX074530:413 KX075470:413 KX075637:413 KX076175:413 KX076587:413 KX074975:413 KX076391:413 KX076457:413 KX076648:413 KX075747:413 KX076820:413 KX075854:413 KX076027:413 KX075082:413 KX074529:413 KX076558:413 KX074640:413 AF327017:416 S82066:425 KX074637:428 AY196320:430 KX077021:432 AY135848:433 KX076122:440 U40464:441 KX075797:453 KX076588:470 KX076111:470 KX074684:470 AF532846:473 AF020639:480 U40776:496
|nearest_unigene=
|nearest_unigene=
|peak_score=1
|peak_score=1

Revision as of 13:26, 8 November 2024

Basic information about the TSS

TSS ID:rfhg_163661.1
Species:human
Chr:chr14
Start:21887868
End:21887876
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2698739,EH38E1701831)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AB749858:0
AB977189:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • AB977156:-1
  • AB977393:9
  • AB977084:-10
  • AB977279:-10
  • AB977356:10
  • ENST00000390437.2:-11
  • AB976960:-11
  • AB749868:-11
  • AB306116:-11
  • AB306068:-11
  • AB976893:-11
  • AB305730:-11
  • AB306105:-11
  • AB976826:-11
  • AB977466:-11
  • AB976737:-11
  • AB977366:-11
  • AB976861:-11
  • AB976968:-11
  • AB977037:-11
  • AB977062:-11
  • AB977078:-11
  • AB977090:-11
  • AB977347:-11
  • AB977227:-11
  • AK301287:-11
  • AB977290:-12
  • AB977289:13
  • AB977226:13
  • AB977348:14
  • AB305679:16
  • AB305705:-20
  • AB977111:21
  • AB305739:22
  • AB976910:33
  • AB976779:-35
  • AB305703:39
  • AB360829:47
  • AF020651:56
  • S60781:68
  • M81774:83
  • DQ286431:86
  • GU122926:86
  • KT207830:86
  • X58746:89
  • AB977395:336
  • AB306021:356
  • AB977277:365
  • M17652:367
  • M17653:367
  • X04940:374
  • M27369:374
  • X04946:374
  • AF532850:382
  • AF532854:382
  • AF532847:382
  • AF532856:382
  • AF532838:382
  • AF532851:382
  • AF532837:382
  • AF532849:383
  • AY135844:383
  • EU340840:383
  • X92883:384
  • X92766:384
  • X92783:384
  • AF532842:384
  • AF532843:387
  • AF532852:387
  • AF532840:387
  • AF532839:387
  • AF532844:387
  • AY135853:387
  • AF532841:389
  • AF532845:389
  • AY135839:389
  • AY135835:389
  • AY135838:389
  • AY135843:389
  • AY135846:389
  • AY135842:389
  • AY135832:389
  • AY135836:389
  • AF532848:389
  • AF532853:389
  • AY135837:389
  • AY135851:389
  • AY135849:389
  • AY135833:389
  • AY135852:389
  • AY135841:389
  • AY135850:389
  • AY135840:391
  • AY135847:394
  • AB977137:394
  • AB977243:394
  • AB976957:394
  • AB976929:394
  • AB976867:394
  • AB977473:394
  • AB976827:394
  • AB976946:394
  • S82064:401
  • AY135834:402
  • AB305742:404
  • AY247836:407
  • KX074530:413
  • KX075470:413
  • KX075637:413
  • KX076175:413
  • KX076587:413
  • KX074975:413
  • KX076391:413
  • KX076457:413
  • KX076648:413
  • KX075747:413
  • KX076820:413
  • KX075854:413
  • KX076027:413
  • KX075082:413
  • KX074529:413
  • KX076558:413
  • KX074640:413
  • AF327017:416
  • S82066:425
  • KX074637:428
  • AY196320:430
  • KX077021:432
  • AY135848:433
  • KX076122:440
  • U40464:441
  • KX075797:453
  • KX076588:470
  • KX076111:470
  • KX074684:470
  • AF532846:473
  • AF020639:480
  • U40776:496
view more...
Gene_name:OR4E1
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-216855
Nearest PromoterID:NM_001317107
Entrez ID:26687
Nearest Unigene:
Nearest Refseq:NM_001317107
Nearest Ensembl:ENSG00000276240
Gene Name:OR4E1
Gene Alias:OR4E1P
Gene Type:protein-coding
CpG%:0.000000
GC%:0.111111
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "AB977156:-1 AB977393:9 AB977084:-10 AB977279:-10 AB977356:10 ENST00000390437.2:-11 AB976960:-11 AB749868:-11 AB306116:-11 AB306068:-11 AB976893:-11 AB305730:-11 AB306105:-11 AB976826:-11 AB977466:-11 AB976737:-11 AB977366:-11 AB976861:-11 AB976968:-11 AB977037:-11 AB977062:-11 AB977078:-11 AB977090:-11 AB977347:-11 AB977227:-11 AK301287:-11 AB977290:-12 AB977289:13 AB977226:13 AB977348:14 AB305679:16 AB305705:-20 AB977111:21 AB305739:22 AB976910:33 AB976779:-35 AB305703:39 AB360829:47 AF020651:56 S60781:68 M81774:83 DQ286431:86 GU122926:86 KT207830:86 X58746:89 AB977395:336 AB306021:356 AB977277:365 M17652:367 M17653:367 X04940:374 M27369:374 X04946:374 AF532850:382 AF532854:382 AF532847:382 AF532856:382 AF532838:382 AF532851:382 AF532837:382 AF532849:383 AY135844:383 EU340840:383 X92883:384 X92766:384 X92783:384 AF532842:384 AF532843:387 AF532852:387 AF532840:387 AF532839:387 AF532844:387 AY135853:387 AF532841:389 AF532845:389 AY135839:389 AY135835:389 AY135838:389 AY135843:389 AY135846:389 AY135842:389 AY135832:389 AY135836:389 AF532848:389 AF532853:389 AY135837:389 AY135851:389 AY135849:389 AY135833:389 AY135852:389 AY135841:389 AY135850:389 AY135840:391 AY135847:394 AB977137:394 AB977243:394 AB976957:394 AB976929:394 AB976867:394 AB977473:394 AB976827:394 AB976946:394 S82064:401 AY135834:402 AB305742:404 AY247836:407 KX074530:413 KX075470:413 KX075637:413 KX076175:413 KX076587:413 KX074975:413 KX076391:413 KX076457:413 KX076648:413 KX075747:413 KX076820:413 KX075854:413 KX076027:413 KX075082:413 KX074529:413 KX076558:413 KX074640:413 AF327017:416 S82066:425 KX074637:428 AY196320:430 KX077021:432 AY135848:433 KX076122:440 U40464:441 KX075797:453 KX076588:470 KX076111:470 KX074684:470 AF532846:473 AF020639:480 U40776:496" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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