TSS: Rfhg 163685.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=AB749838:1 AB976760:2 AB749842:-4 AB976724:8 ENST00000390442.3:11 LP895900:11 AB306098:11 BC070343:11 AB977363:-15 AB976794:15 AB977010:16 AB305753:24 AB977431:24 AB977390:26 AB306067:29 AB305670:36 AB305796:-40 AB305771:-41 AB977188:-41 AB976850:-41 AB977232:-41 AB977261:-41 AB977340:41 AB305760:44 AB977117:46 AY475219:49 AB305712:58 AB976799:58 M17655:67 M17656:67 X92768:67 AB977403:67 DQ341452:67 M17654:73 AB306097:74 AB306028:86 AB977142:-96 AB306031:331 AY135854:382 AY135855:382 AY135856:382 AY135857:382 AY135858:382 AB976935:389 AB977252:389 AB976865:389 AB977184:390 AB305798:395 U83990:402 KX075680:408 KX074727:408 KX076788:408 AB305716:457 KX075210:484 KX076684:485 KX075599:486 KX075207:493 KX075654:496 KX075913:496 KX075912:496 KX076244:496 KX077072:496 KX075351:499
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001317107
|nearest_promoter_id=NM_001317107
|nearest_refseq=NM_001317107
|nearest_refseq=NM_001317107
|nearest_transcripts=AB976760:2 AB749842:-4 AB976724:8 ENST00000390442.3:11 LP895900:11 AB306098:11 BC070343:11 AB977363:-15 AB976794:15 AB977010:16 AB305753:24 AB977431:24 AB977390:26 AB306067:29 AB305670:36 AB305796:-40 AB305771:-41 AB977188:-41 AB976850:-41 AB977232:-41 AB977261:-41 AB977340:41 AB305760:44 AB977117:46 AY475219:49 AB305712:58 AB976799:58 M17655:67 M17656:67 X92768:67 AB977403:67 DQ341452:67 M17654:73 AB306097:74 AB306028:86 AB977142:-96 AB306031:331 AY135854:382 AY135855:382 AY135856:382 AY135857:382 AY135858:382 AB976935:389 AB977252:389 AB976865:389 AB977184:390 AB305798:395 U83990:402 KX075680:408 KX074727:408 KX076788:408 AB305716:457 KX075210:484 KX076684:485 KX075599:486 KX075207:493 KX075654:496 KX075913:496 KX075912:496 KX076244:496 KX077072:496 KX075351:499
|nearest_unigene=
|nearest_unigene=
|peak_score=1
|peak_score=1

Revision as of 13:26, 8 November 2024

Basic information about the TSS

TSS ID:rfhg_163685.1
Species:human
Chr:chr14
Start:21965440
End:21965440
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2698787,EH38E1701867)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AB749838:1
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • AB976760:2
  • AB749842:-4
  • AB976724:8
  • ENST00000390442.3:11
  • LP895900:11
  • AB306098:11
  • BC070343:11
  • AB977363:-15
  • AB976794:15
  • AB977010:16
  • AB305753:24
  • AB977431:24
  • AB977390:26
  • AB306067:29
  • AB305670:36
  • AB305796:-40
  • AB305771:-41
  • AB977188:-41
  • AB976850:-41
  • AB977232:-41
  • AB977261:-41
  • AB977340:41
  • AB305760:44
  • AB977117:46
  • AY475219:49
  • AB305712:58
  • AB976799:58
  • M17655:67
  • M17656:67
  • X92768:67
  • AB977403:67
  • DQ341452:67
  • M17654:73
  • AB306097:74
  • AB306028:86
  • AB977142:-96
  • AB306031:331
  • AY135854:382
  • AY135855:382
  • AY135856:382
  • AY135857:382
  • AY135858:382
  • AB976935:389
  • AB977252:389
  • AB976865:389
  • AB977184:390
  • AB305798:395
  • U83990:402
  • KX075680:408
  • KX074727:408
  • KX076788:408
  • AB305716:457
  • KX075210:484
  • KX076684:485
  • KX075599:486
  • KX075207:493
  • KX075654:496
  • KX075913:496
  • KX075912:496
  • KX076244:496
  • KX077072:496
  • KX075351:499
view more...
Gene_name:OR4E1
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-294423
Nearest PromoterID:NM_001317107
Entrez ID:26687
Nearest Unigene:
Nearest Refseq:NM_001317107
Nearest Ensembl:ENSG00000276240
Gene Name:OR4E1
Gene Alias:OR4E1P
Gene Type:protein-coding
CpG%:0.000000
GC%:0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "AB976760:2 AB749842:-4 AB976724:8 ENST00000390442.3:11 LP895900:11 AB306098:11 BC070343:11 AB977363:-15 AB976794:15 AB977010:16 AB305753:24 AB977431:24 AB977390:26 AB306067:29 AB305670:36 AB305796:-40 AB305771:-41 AB977188:-41 AB976850:-41 AB977232:-41 AB977261:-41 AB977340:41 AB305760:44 AB977117:46 AY475219:49 AB305712:58 AB976799:58 M17655:67 M17656:67 X92768:67 AB977403:67 DQ341452:67 M17654:73 AB306097:74 AB306028:86 AB977142:-96 AB306031:331 AY135854:382 AY135855:382 AY135856:382 AY135857:382 AY135858:382 AB976935:389 AB977252:389 AB976865:389 AB977184:390 AB305798:395 U83990:402 KX075680:408 KX074727:408 KX076788:408 AB305716:457 KX075210:484 KX076684:485 KX075599:486 KX075207:493 KX075654:496 KX075913:496 KX075912:496 KX076244:496 KX077072:496 KX075351:499" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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