TSS: Rfhg 163701.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000390445.2:0 AB306032:0 AB306062:0 LP895901:0 AB977065:-11 BC106077:26 AB305714:42 AB977197:45 AB976776:45 AB977017:45 AB305706:46 AB976731:46 AB749864:47 AB749888:48 AB976920:55 AB976820:58 AB977287:64 AB977302:64 AB976734:64 AB305671:66 AB749896:69 AB306088:70 AB305691:70 AB976811:70 AB306101:71 AB305781:71 AB749840:71 AB749860:72 AB977479:73 AB976746:77 AB360831:79 AB977191:80 AB977286:80 AB977478:80 AB977102:80 AB977458:80 AB305755:81 AB976897:81 AB977377:81 AB977469:81 AB305732:82 AB360834:82 AB977354:89 AB305648:106 X04955:142 X04948:142 X58333:142 U51444:142 EU030677:142 AY232282:142 AY232283:142 AY247834:142 AY834221:142 DQ341450:142 JQ778267:142 JQ778269:142 AB306003:340 Z77832:341 GQ502835:345 AB976941:375 AB306011:386 AB977124:393 KX074284:396 AB977447:396 Z75935:397 Z75937:397 Z75938:397 Z75934:398 Z75933:398 KX075610:402 KX075511:402 KX075264:403 KX076922:403 KX076947:403 KX075336:403 KX075826:403 KX076842:403 KX074224:403 KX075432:403 KX076053:403 KX076867:403 KX074369:403 KX076007:403 KX076199:403 KX074561:403 KX074575:403 KX075460:403 KX076197:403 KX076672:403 KX076688:403 KX076761:403 KX076832:403 KX074765:403 KX075679:403 KX076140:403 KX076499:403 KX076679:403 KX076695:403 KX074249:403 KX074474:403 KX075700:403 KX075710:403 KX076435:403 KX077077:403 KX074609:403 KX075969:403 KX076448:403 KX076611:403 KX077086:403 KX075323:403 KX076075:403 KX076133:403 KX075678:403 KX076996:403 KX075721:403 KX075629:403 KX074868:403 KX076052:403 KX074320:403 KX075080:403 KX075737:403 KX075975:403 KX076415:403 KX074611:403 KX074946:406 AB976983:413 KX077078:415 KX075774:415 KX075325:421 AB977457:421 Z75939:423 KX075222:429 KX075271:432 X92031:440 Z75936:441 KX075338:443 X92029:451 X92022:453 S76588:456 Z75932:457 X92035:457 X92030:458 X92032:458 X92036:458 X92020:458 X92021:458 X92019:458 X92017:458 X92026:458 X92027:458 X92037:458 X92038:458 U39092:459 AB976839:461 AB976997:461 AB976836:461 S61980:462 AB977127:462 X92025:462 X92024:462 AB976809:462 AB976780:462 X92023:462 AB976782:462 Z75931:463 Z75930:463 X92034:463 X92018:473 X92028:475 X92033:475 L34695:477 X92012:487 X92002:488 X92003:488 X92005:488 X92006:488 X92008:488 X92009:488 X92010:488 X92011:488 X92013:488 X92014:488 X92015:488 X92016:488 X92001:491 X92004:495
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001317107
|nearest_promoter_id=NM_001317107
|nearest_refseq=NM_001317107
|nearest_refseq=NM_001317107
|nearest_transcripts=AB977065:-11 BC106077:26 AB305714:42 AB977197:45 AB976776:45 AB977017:45 AB305706:46 AB976731:46 AB749864:47 AB749888:48 AB976920:55 AB976820:58 AB977287:64 AB977302:64 AB976734:64 AB305671:66 AB749896:69 AB306088:70 AB305691:70 AB976811:70 AB306101:71 AB305781:71 AB749840:71 AB749860:72 AB977479:73 AB976746:77 AB360831:79 AB977191:80 AB977286:80 AB977478:80 AB977102:80 AB977458:80 AB305755:81 AB976897:81 AB977377:81 AB977469:81 AB305732:82 AB360834:82 AB977354:89 AB305648:106 X04955:142 X04948:142 X58333:142 U51444:142 EU030677:142 AY232282:142 AY232283:142 AY247834:142 AY834221:142 DQ341450:142 JQ778267:142 JQ778269:142 AB306003:340 Z77832:341 GQ502835:345 AB976941:375 AB306011:386 AB977124:393 KX074284:396 AB977447:396 Z75935:397 Z75937:397 Z75938:397 Z75934:398 Z75933:398 KX075610:402 KX075511:402 KX075264:403 KX076922:403 KX076947:403 KX075336:403 KX075826:403 KX076842:403 KX074224:403 KX075432:403 KX076053:403 KX076867:403 KX074369:403 KX076007:403 KX076199:403 KX074561:403 KX074575:403 KX075460:403 KX076197:403 KX076672:403 KX076688:403 KX076761:403 KX076832:403 KX074765:403 KX075679:403 KX076140:403 KX076499:403 KX076679:403 KX076695:403 KX074249:403 KX074474:403 KX075700:403 KX075710:403 KX076435:403 KX077077:403 KX074609:403 KX075969:403 KX076448:403 KX076611:403 KX077086:403 KX075323:403 KX076075:403 KX076133:403 KX075678:403 KX076996:403 KX075721:403 KX075629:403 KX074868:403 KX076052:403 KX074320:403 KX075080:403 KX075737:403 KX075975:403 KX076415:403 KX074611:403 KX074946:406 AB976983:413 KX077078:415 KX075774:415 KX075325:421 AB977457:421 Z75939:423 KX075222:429 KX075271:432 X92031:440 Z75936:441 KX075338:443 X92029:451 X92022:453 S76588:456 Z75932:457 X92035:457 X92030:458 X92032:458 X92036:458 X92020:458 X92021:458 X92019:458 X92017:458 X92026:458 X92027:458 X92037:458 X92038:458 U39092:459 AB976839:461 AB976997:461 AB976836:461 S61980:462 AB977127:462 X92025:462 X92024:462 AB976809:462 AB976780:462 X92023:462 AB976782:462 Z75931:463 Z75930:463 X92034:463 X92018:473 X92028:475 X92033:475 L34695:477 X92012:487 X92002:488 X92003:488 X92005:488 X92006:488 X92008:488 X92009:488 X92010:488 X92011:488 X92013:488 X92014:488 X92015:488 X92016:488 X92001:491 X92004:495
|nearest_unigene=
|nearest_unigene=
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000390445.2
|transcript_name=ENST00000390445.2 AB306032 AB306062 LP895901
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_163701.1
|tss_id=rfhg_163701.1

Revision as of 13:26, 8 November 2024

Basic information about the TSS

TSS ID:rfhg_163701.1
Species:human
Chr:chr14
Start:21997533
End:21997544
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2698805,EH38E1701885)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000390445.2:0
AB306032:0
AB306062:0
LP895901:0
GeneID:
HGNC/MGI_ID:HGNC:12113
UniProt_ID:A0A0B4J275
Nearer transcript ids and distances:
  • AB977065:-11
  • BC106077:26
  • AB305714:42
  • AB977197:45
  • AB976776:45
  • AB977017:45
  • AB305706:46
  • AB976731:46
  • AB749864:47
  • AB749888:48
  • AB976920:55
  • AB976820:58
  • AB977287:64
  • AB977302:64
  • AB976734:64
  • AB305671:66
  • AB749896:69
  • AB306088:70
  • AB305691:70
  • AB976811:70
  • AB306101:71
  • AB305781:71
  • AB749840:71
  • AB749860:72
  • AB977479:73
  • AB976746:77
  • AB360831:79
  • AB977191:80
  • AB977286:80
  • AB977478:80
  • AB977102:80
  • AB977458:80
  • AB305755:81
  • AB976897:81
  • AB977377:81
  • AB977469:81
  • AB305732:82
  • AB360834:82
  • AB977354:89
  • AB305648:106
  • X04955:142
  • X04948:142
  • X58333:142
  • U51444:142
  • EU030677:142
  • AY232282:142
  • AY232283:142
  • AY247834:142
  • AY834221:142
  • DQ341450:142
  • JQ778267:142
  • JQ778269:142
  • AB306003:340
  • Z77832:341
  • GQ502835:345
  • AB976941:375
  • AB306011:386
  • AB977124:393
  • KX074284:396
  • AB977447:396
  • Z75935:397
  • Z75937:397
  • Z75938:397
  • Z75934:398
  • Z75933:398
  • KX075610:402
  • KX075511:402
  • KX075264:403
  • KX076922:403
  • KX076947:403
  • KX075336:403
  • KX075826:403
  • KX076842:403
  • KX074224:403
  • KX075432:403
  • KX076053:403
  • KX076867:403
  • KX074369:403
  • KX076007:403
  • KX076199:403
  • KX074561:403
  • KX074575:403
  • KX075460:403
  • KX076197:403
  • KX076672:403
  • KX076688:403
  • KX076761:403
  • KX076832:403
  • KX074765:403
  • KX075679:403
  • KX076140:403
  • KX076499:403
  • KX076679:403
  • KX076695:403
  • KX074249:403
  • KX074474:403
  • KX075700:403
  • KX075710:403
  • KX076435:403
  • KX077077:403
  • KX074609:403
  • KX075969:403
  • KX076448:403
  • KX076611:403
  • KX077086:403
  • KX075323:403
  • KX076075:403
  • KX076133:403
  • KX075678:403
  • KX076996:403
  • KX075721:403
  • KX075629:403
  • KX074868:403
  • KX076052:403
  • KX074320:403
  • KX075080:403
  • KX075737:403
  • KX075975:403
  • KX076415:403
  • KX074611:403
  • KX074946:406
  • AB976983:413
  • KX077078:415
  • KX075774:415
  • KX075325:421
  • AB977457:421
  • Z75939:423
  • KX075222:429
  • KX075271:432
  • X92031:440
  • Z75936:441
  • KX075338:443
  • X92029:451
  • X92022:453
  • S76588:456
  • Z75932:457
  • X92035:457
  • X92030:458
  • X92032:458
  • X92036:458
  • X92020:458
  • X92021:458
  • X92019:458
  • X92017:458
  • X92026:458
  • X92027:458
  • X92037:458
  • X92038:458
  • U39092:459
  • AB976839:461
  • AB976997:461
  • AB976836:461
  • S61980:462
  • AB977127:462
  • X92025:462
  • X92024:462
  • AB976809:462
  • AB976780:462
  • X92023:462
  • AB976782:462
  • Z75931:463
  • Z75930:463
  • X92034:463
  • X92018:473
  • X92028:475
  • X92033:475
  • L34695:477
  • X92012:487
  • X92002:488
  • X92003:488
  • X92005:488
  • X92006:488
  • X92008:488
  • X92009:488
  • X92010:488
  • X92011:488
  • X92013:488
  • X92014:488
  • X92015:488
  • X92016:488
  • X92001:491
  • X92004:495
view more...
Gene_name:OR4E1
Gene_symbol:TRAV17
Gene_synonyms:TCRAV17S1 TCRAV3S1
Gene_source:HGNC:12113



TATA-Box annotation

Distance to TSS:-326521
Nearest PromoterID:NM_001317107
Entrez ID:26687
Nearest Unigene:
Nearest Refseq:NM_001317107
Nearest Ensembl:ENSG00000276240
Gene Name:OR4E1
Gene Alias:OR4E1P
Gene Type:protein-coding
CpG%:0.000000
GC%:0.416667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "AB977065:-11 BC106077:26 AB305714:42 AB977197:45 AB976776:45 AB977017:45 AB305706:46 AB976731:46 AB749864:47 AB749888:48 AB976920:55 AB976820:58 AB977287:64 AB977302:64 AB976734:64 AB305671:66 AB749896:69 AB306088:70 AB305691:70 AB976811:70 AB306101:71 AB305781:71 AB749840:71 AB749860:72 AB977479:73 AB976746:77 AB360831:79 AB977191:80 AB977286:80 AB977478:80 AB977102:80 AB977458:80 AB305755:81 AB976897:81 AB977377:81 AB977469:81 AB305732:82 AB360834:82 AB977354:89 AB305648:106 X04955:142 X04948:142 X58333:142 U51444:142 EU030677:142 AY232282:142 AY232283:142 AY247834:142 AY834221:142 DQ341450:142 JQ778267:142 JQ778269:142 AB306003:340 Z77832:341 GQ502835:345 AB976941:375 AB306011:386 AB977124:393 KX074284:396 AB977447:396 Z75935:397 Z75937:397 Z75938:397 Z75934:398 Z75933:398 KX075610:402 KX075511:402 KX075264:403 KX076922:403 KX076947:403 KX075336:403 KX075826:403 KX076842:403 KX074224:403 KX075432:403 KX076053:403 KX076867:403 KX074369:403 KX076007:403 KX076199:403 KX074561:403 KX074575:403 KX075460:403 KX076197:403 KX076672:403 KX076688:403 KX076761:403 KX076832:403 KX074765:403 KX075679:403 KX076140:403 KX076499:403 KX076679:403 KX076695:403 KX074249:403 KX074474:403 KX075700:403 KX075710:403 KX076435:403 KX077077:403 KX074609:403 KX075969:403 KX076448:403 KX076611:403 KX077086:403 KX075323:403 KX076075:403 KX076133:403 KX075678:403 KX076996:403 KX075721:403 KX075629:403 KX074868:403 KX076052:403 KX074320:403 KX075080:403 KX075737:403 KX075975:403 KX076415:403 KX074611:403 KX074946:406 AB976983:413 KX077078:415 KX075774:415 KX075325:421 AB977457:421 Z75939:423 KX075222:429 KX075271:432 X92031:440 Z75936:441 KX075338:443 X92029:451 X92022:453 S76588:456 Z75932:457 X92035:457 X92030:458 X92032:458 X92036:458 X92020:458 X92021:458 X92019:458 X92017:458 X92026:458 X92027:458 X92037:458 X92038:458 U39092:459 AB976839:461 AB976997:461 AB976836:461 S61980:462 AB977127:462 X92025:462 X92024:462 AB976809:462 AB976780:462 X92023:462 AB976782:462 Z75931:463 Z75930:463 X92034:463 X92018:473 X92028:475 X92033:475 L34695:477 X92012:487 X92002:488 X92003:488 X92005:488 X92006:488 X92008:488 X92009:488 X92010:488 X92011:488 X92013:488 X92014:488 X92015:488 X92016:488 X92001:491 X92004:495" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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