TSS: Rfhg 163709.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=AB976963:73 AB749900:84 AB977386:85 AB977131:86 AB977486:88 LP895902:88 AB977153:88 AB305752:88 AB977154:88 AB977406:88 AB977139:88 AB977208:88 AB977308:88 AB976975:88 AB977415:88 AB977034:88 AB977337:88 AB977394:88 AB976821:88 AB977031:88 AB977036:88 AB977095:88 AB977100:88 AB977172:88 AB977225:88 AB977324:88 AB977106:88 AB977398:89 AB976943:90 AB306029:91 AB977014:91 AB977245:91 AB976744:93 AB977144:95 AB977412:97 AB976828:98 X07135:101 AB305765:122 AB977464:165 X70310:183 S60784:184 AB977362:194 AB164620:205 FJ795357:205 X01403:213 AB305663:214 AB305728:392 AB977001:459 AB976888:468 AB306128:469 X92779:471 X92772:471 GQ502794:471 GQ502859:471 GQ502796:474 GQ502797:474 AB977238:474 KX075259:475 AB305772:476 GQ502832:476 GQ502824:477 GQ502857:480 GQ502795:480 GQ502845:483 GQ502837:483 GQ502838:483 GQ502853:495
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001317107
|nearest_promoter_id=NM_001317107
|nearest_refseq=NM_001317107
|nearest_refseq=NM_001317107
|nearest_transcripts=AB749900:84 AB977386:85 AB977131:86 AB977486:88 LP895902:88 AB977153:88 AB305752:88 AB977154:88 AB977406:88 AB977139:88 AB977208:88 AB977308:88 AB976975:88 AB977415:88 AB977034:88 AB977337:88 AB977394:88 AB976821:88 AB977031:88 AB977036:88 AB977095:88 AB977100:88 AB977172:88 AB977225:88 AB977324:88 AB977106:88 AB977398:89 AB976943:90 AB306029:91 AB977014:91 AB977245:91 AB976744:93 AB977144:95 AB977412:97 AB976828:98 X07135:101 AB305765:122 AB977464:165 X70310:183 S60784:184 AB977362:194 AB164620:205 FJ795357:205 X01403:213 AB305663:214 AB305728:392 AB977001:459 AB976888:468 AB306128:469 X92779:471 X92772:471 GQ502794:471 GQ502859:471 GQ502796:474 GQ502797:474 AB977238:474 KX075259:475 AB305772:476 GQ502832:476 GQ502824:477 GQ502857:480 GQ502795:480 GQ502845:483 GQ502837:483 GQ502838:483 GQ502853:495
|nearest_unigene=
|nearest_unigene=
|peak_score=1
|peak_score=1

Revision as of 13:26, 8 November 2024

Basic information about the TSS

TSS ID:rfhg_163709.1
Species:human
Chr:chr14
Start:22007422
End:22007424
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D2698810,EH38E1701890)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AB976963:73
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • AB749900:84
  • AB977386:85
  • AB977131:86
  • AB977486:88
  • LP895902:88
  • AB977153:88
  • AB305752:88
  • AB977154:88
  • AB977406:88
  • AB977139:88
  • AB977208:88
  • AB977308:88
  • AB976975:88
  • AB977415:88
  • AB977034:88
  • AB977337:88
  • AB977394:88
  • AB976821:88
  • AB977031:88
  • AB977036:88
  • AB977095:88
  • AB977100:88
  • AB977172:88
  • AB977225:88
  • AB977324:88
  • AB977106:88
  • AB977398:89
  • AB976943:90
  • AB306029:91
  • AB977014:91
  • AB977245:91
  • AB976744:93
  • AB977144:95
  • AB977412:97
  • AB976828:98
  • X07135:101
  • AB305765:122
  • AB977464:165
  • X70310:183
  • S60784:184
  • AB977362:194
  • AB164620:205
  • FJ795357:205
  • X01403:213
  • AB305663:214
  • AB305728:392
  • AB977001:459
  • AB976888:468
  • AB306128:469
  • X92779:471
  • X92772:471
  • GQ502794:471
  • GQ502859:471
  • GQ502796:474
  • GQ502797:474
  • AB977238:474
  • KX075259:475
  • AB305772:476
  • GQ502832:476
  • GQ502824:477
  • GQ502857:480
  • GQ502795:480
  • GQ502845:483
  • GQ502837:483
  • GQ502838:483
  • GQ502853:495
view more...
Gene_name:OR4E1
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-336406
Nearest PromoterID:NM_001317107
Entrez ID:26687
Nearest Unigene:
Nearest Refseq:NM_001317107
Nearest Ensembl:ENSG00000276240
Gene Name:OR4E1
Gene Alias:OR4E1P
Gene Type:protein-coding
CpG%:0.000000
GC%:0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "AB749900:84 AB977386:85 AB977131:86 AB977486:88 LP895902:88 AB977153:88 AB305752:88 AB977154:88 AB977406:88 AB977139:88 AB977208:88 AB977308:88 AB976975:88 AB977415:88 AB977034:88 AB977337:88 AB977394:88 AB976821:88 AB977031:88 AB977036:88 AB977095:88 AB977100:88 AB977172:88 AB977225:88 AB977324:88 AB977106:88 AB977398:89 AB976943:90 AB306029:91 AB977014:91 AB977245:91 AB976744:93 AB977144:95 AB977412:97 AB976828:98 X07135:101 AB305765:122 AB977464:165 X70310:183 S60784:184 AB977362:194 AB164620:205 FJ795357:205 X01403:213 AB305663:214 AB305728:392 AB977001:459 AB976888:468 AB306128:469 X92779:471 X92772:471 GQ502794:471 GQ502859:471 GQ502796:474 GQ502797:474 AB977238:474 KX075259:475 AB305772:476 GQ502832:476 GQ502824:477 GQ502857:480 GQ502795:480 GQ502845:483 GQ502837:483 GQ502838:483 GQ502853:495" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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