TSS: Rfhg 16427.1: Difference between revisions

Revision as of 13:37, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_16427.1
Species:	human
Chr:	chr1

Start:	179575909
End:	179575909
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AJ279254:-24
GeneID:	7827
HGNC/MGI_ID:	HGNC:13394
UniProt_ID:
Nearer transcript ids and distances:	ENST00000367615.9:-39 NM_014625.4:-39 NM_001297575.2:-39 ENST00000367616.4:-43 BC029141:-43 KJ901849:45 KJ905342:45 view more...

Gene_name:	NPHS2
Gene_symbol:	NPHS2
Gene_synonyms:	PDCN SRN1
Gene_source:	HGNC:13394

TATA-Box annotation

Distance to TSS:	39
Nearest PromoterID:	NM_001297575
Entrez ID:	7827
Nearest Unigene:	Hs.412710
Nearest Refseq:	NM_014625
Nearest Ensembl:	ENSG00000116218
Gene Name:	NPHS2
Gene Alias:	PDCN\|SRN1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AJ279254:-24 ENST00000367615.9:-39 NM_014625.4:-39 NM_001297575.2:-39 ENST00000367616.4:-43 BC029141:-43 KJ901849:45 KJ905342:45
 |annotation=promoter-TSS (NM_014625)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001297575
 |nearest_refseq=NM_014625
+|nearest_transcripts=ENST00000367615.9:-39 NM_014625.4:-39 NM_001297575.2:-39 ENST00000367616.4:-43 BC029141:-43 KJ901849:45 KJ905342:45
 |nearest_unigene=Hs.412710
 |peak_score=1