TSS: Rfhg 165472.1: Difference between revisions

Revision as of 14:01, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_165472.1
Species:	human
Chr:	chr14

Start:	39266606
End:	39266628
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2711353,EH38E1710215)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001354150.2:44
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AK055791:46 AL833415:-136 NM_001354139.2:294 NM_001354137.2:294 NM_001354142.1:-308 NM_001354149.1:-308 NM_001354147.1:-308 NM_001247988.1:-308 NM_203356.2:-308 NM_001354148.1:-308 NR_148721.1:-308 AF338233:-309 ENST00000556990.1:458 ENST00000396158.6:496 NM_001354143.1:496 NM_001354138.1:496 view more...

Gene_name:	MIA2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-55
Nearest PromoterID:	NM_001354150
Entrez ID:	4253
Nearest Unigene:	Hs.287694
Nearest Refseq:	NM_005930
Nearest Ensembl:	ENSG00000150527
Gene Name:	MIA2
Gene Alias:	CTAGE5\|MEA6\|MGEA\|MGEA11\|MGEA6\|TALI
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.434783
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "AK055791:46 AL833415:-136 NM_001354139.2:294 NM_001354137.2:294 NM_001354142.1:-308 NM_001354149.1:-308 NM_001354147.1:-308 NM_001247988.1:-308 NM_203356.2:-308 NM_001354148.1:-308 NR_148721.1:-308 AF338233:-309 ENST00000556990.1:458 ENST00000396158.6:496 NM_001354143.1:496 NM_001354138.1:496" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001354150.2:44 AK055791:46 AL833415:-136 NM_001354139.2:294 NM_001354137.2:294 NM_001354142.1:-308 NM_001354149.1:-308 NM_001354147.1:-308 NM_001247988.1:-308 NM_203356.2:-308 NM_001354148.1:-308 NR_148721.1:-308 AF338233:-309 ENST00000556990.1:458 ENST00000396158.6:496 NM_001354143.1:496 NM_001354138.1:496
 |annotation=promoter-TSS (NR_148723)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001354150
 |nearest_refseq=NM_005930
+|nearest_transcripts=AK055791:46 AL833415:-136 NM_001354139.2:294 NM_001354137.2:294 NM_001354142.1:-308 NM_001354149.1:-308 NM_001354147.1:-308 NM_001247988.1:-308 NM_203356.2:-308 NM_001354148.1:-308 NR_148721.1:-308 AF338233:-309 ENST00000556990.1:458 ENST00000396158.6:496 NM_001354143.1:496 NM_001354138.1:496
 |nearest_unigene=Hs.287694
 |peak_score=1