TSS: Rfhg 165609.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=MG828521:-15 MG828522:-15
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=dELS
|ccre_category=dELS
Line 25: Line 26:
|nearest_promoter_id=NR_039996
|nearest_promoter_id=NR_039996
|nearest_refseq=NR_039996
|nearest_refseq=NR_039996
|nearest_transcripts=
|nearest_unigene=Hs.547419
|nearest_unigene=Hs.547419
|peak_score=1
|peak_score=1

Revision as of 14:03, 8 November 2024

Basic information about the TSS

TSS ID:rfhg_165609.1
Species:human
Chr:chr14
Start:48260641
End:48260644
Strand:-
Source datasetsFANTOM5|DRA000914
ProtocolCAGE
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:dELS,CTCF-bound (EH38D2715349,EH38E1711909)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:MG828521:-15
MG828522:-15
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:LINC00648
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:-465628
    Nearest PromoterID:NR_039996
    Entrez ID:100506433
    Nearest Unigene:Hs.547419
    Nearest Refseq:NR_039996
    Nearest Ensembl:ENSG00000259129
    Gene Name:LINC00648
    Gene Alias:-
    Gene Type:ncRNA
    CpG%:0.333333
    GC%:0.750000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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