TSS: Rfhg 166885.1: Difference between revisions

Revision as of 14:27, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_166885.1
Species:	human
Chr:	chr14

Start:	61750015
End:	61750040
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2726633,EH38E1719924)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF329600:-442 MA565177:-442
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	HIF1A-AS2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-938
Nearest PromoterID:	NR_045406
Entrez ID:	100750247
Nearest Unigene:	Hs.597216
Nearest Refseq:	NR_045406
Nearest Ensembl:
Gene Name:	HIF1A-AS2
Gene Alias:	3'aHIF-1A\|aHIF
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.423077
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF329600:-442 MA565177:-442
 |annotation=promoter-TSS (NR_045406)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_045406
 |nearest_refseq=NR_045406
+|nearest_transcripts=
 |nearest_unigene=Hs.597216
 |peak_score=1