TSS: Rfhg 17179.1: Difference between revisions

Revision as of 15:56, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_17179.1
Species:	human
Chr:	chr1

Start:	186301588
End:	186301599
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2252184,EH38E1405958)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PRG4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	5320
Nearest PromoterID:	NM_001127710
Entrez ID:	10216
Nearest Unigene:	Hs.647723
Nearest Refseq:	NM_005807
Nearest Ensembl:	ENSG00000116690
Gene Name:	PRG4
Gene Alias:	CACP\|HAPO\|JCAP\|MSF\|SZP
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (NM_001127709, exon 4 of 11)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001127710
 |nearest_refseq=NM_005807
+|nearest_transcripts=
 |nearest_unigene=Hs.647723
 |peak_score=1