TSS: Rfhg 172970.1: Difference between revisions

Revision as of 16:16, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_172970.1
Species:	human
Chr:	chr15

Start:	41408415
End:	41408478
Strand:	-

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2780614,EH38E1756583)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	NDUFAF1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-5950
Nearest PromoterID:	NR_045620
Entrez ID:	51103
Nearest Unigene:	Hs.106529
Nearest Refseq:	NM_016013
Nearest Ensembl:	ENSG00000137806
Gene Name:	NDUFAF1
Gene Alias:	CGI-65\|CGI65\|CIA30\|MC1DN11
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.515625
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=Intergenic
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_045620
 |nearest_refseq=NM_016013
+|nearest_transcripts=
 |nearest_unigene=Hs.106529
 |peak_score=1