TSS: Rfhg 173884.1: Difference between revisions

Revision as of 11:15, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_173884.1
Species:	human
Chr:	chr15

Start:	50424840
End:	50424843
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2787591,EH38E1761364)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF349301:-132 MA584878:-132
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000561211.5:-346 BC051345:-362 ENST00000560982.5:-392 ENST00000625664.2:-413 BC026954:-413 ENST00000560730.5:-425 BC092443:-425 BC110590:-429 ENST00000560885.5:-435 ENST00000559329.5:-435 ENST00000307179.9:-435 NM_001283049.2:-435 NM_005154.5:-435 NM_001128610.3:-435 BC015545:-435 D29956:-437 ENST00000558892.1:-441 BC038801:-441 ENST00000425032.7:-453 AK296480:-453 ENST00000560954.5:-458 ENST00000396444.7:-458 AK292400:-458 BX537420:-458 LF383731:-458 MA619308:-458 ENST00000560297.5:-460 view more...

Gene_name:	USP8
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	436
Nearest PromoterID:	NM_001283049
Entrez ID:	9101
Nearest Unigene:	Hs.443731
Nearest Refseq:	NM_005154
Nearest Ensembl:	ENSG00000138592
Gene Name:	USP8
Gene Alias:	HumORF8\|PITA4\|SPG59\|UBPY
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "ENST00000561211.5:-346 BC051345:-362 ENST00000560982.5:-392 ENST00000625664.2:-413 BC026954:-413 ENST00000560730.5:-425 BC092443:-425 BC110590:-429 ENST00000560885.5:-435 ENST00000559329.5:-435 ENST00000307179.9:-435 NM_001283049.2:-435 NM_005154.5:-435 NM_001128610.3:-435 BC015545:-435 D29956:-437 ENST00000558892.1:-441 BC038801:-441 ENST00000425032.7:-453 AK296480:-453 ENST00000560954.5:-458 ENST00000396444.7:-458 AK292400:-458 BX537420:-458 LF383731:-458 MA619308:-458 ENST00000560297.5:-460" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF349301:-132 MA584878:-132 ENST00000561211.5:-346 BC051345:-362 ENST00000560982.5:-392 ENST00000625664.2:-413 BC026954:-413 ENST00000560730.5:-425 BC092443:-425 BC110590:-429 ENST00000560885.5:-435 ENST00000559329.5:-435 ENST00000307179.9:-435 NM_001283049.2:-435 NM_005154.5:-435 NM_001128610.3:-435 BC015545:-435 D29956:-437 ENST00000558892.1:-441 BC038801:-441 ENST00000425032.7:-453 AK296480:-453 ENST00000560954.5:-458 ENST00000396444.7:-458 AK292400:-458 BX537420:-458 LF383731:-458 MA619308:-458 ENST00000560297.5:-460
 |annotation=intron (NM_001128610, intron 1 of 19)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001283049
 |nearest_refseq=NM_005154
+|nearest_transcripts=ENST00000561211.5:-346 BC051345:-362 ENST00000560982.5:-392 ENST00000625664.2:-413 BC026954:-413 ENST00000560730.5:-425 BC092443:-425 BC110590:-429 ENST00000560885.5:-435 ENST00000559329.5:-435 ENST00000307179.9:-435 NM_001283049.2:-435 NM_005154.5:-435 NM_001128610.3:-435 BC015545:-435 D29956:-437 ENST00000558892.1:-441 BC038801:-441 ENST00000425032.7:-453 AK296480:-453 ENST00000560954.5:-458 ENST00000396444.7:-458 AK292400:-458 BX537420:-458 LF383731:-458 MA619308:-458 ENST00000560297.5:-460
 |nearest_unigene=Hs.443731
 |peak_score=1