TSS: Rfhg 17492.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF205380:31 MA440957:31 ENST00000469214.2:32 ENST00000400968.7:49 NM_001331020.2:49 NM_001173524.2:49 ENST00000415442.2:56 ENST00000460715.2:60 AK024044:71 AK314594:72 AH003763:81 ENST00000432079.5:-96 ENST00000506303.1:96 CR936683:-96 LF212847:188 MA448424:188 NM_004600.5:311 NM_001042369.2:311 NM_001173525.1:311 NM_001042370.2:311 ENST00000367446.7:471 BC036658:471 ENST00000367443.5:494 ENST00000367444.7:494 ENST00000367445.7:494 AY205314:494 AY205315:494 M25077:494
|annotation=promoter-TSS (NM_001350846)
|annotation=promoter-TSS (NM_001350846)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_001350847
|nearest_promoter_id=NM_001350847
|nearest_refseq=NM_015984
|nearest_refseq=NM_015984
|nearest_transcripts=ENST00000469214.2:32 ENST00000400968.7:49 NM_001331020.2:49 NM_001173524.2:49 ENST00000415442.2:56 ENST00000460715.2:60 AK024044:71 AK314594:72 AH003763:81 ENST00000432079.5:-96 ENST00000506303.1:96 CR936683:-96 LF212847:188 MA448424:188 NM_004600.5:311 NM_001042369.2:311 NM_001173525.1:311 NM_001042370.2:311 ENST00000367446.7:471 BC036658:471 ENST00000367443.5:494 ENST00000367444.7:494 ENST00000367445.7:494 AY205314:494 AY205315:494 M25077:494
|nearest_unigene=Hs.145469
|nearest_unigene=Hs.145469
|peak_score=1
|peak_score=1

Revision as of 11:33, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_17492.1
Species:human
Chr:chr1
Start:193059550
End:193059563
Strand:+
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2256058,EH38E1407864)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF205380:31
MA440957:31
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000469214.2:32
  • ENST00000400968.7:49
  • NM_001331020.2:49
  • NM_001173524.2:49
  • ENST00000415442.2:56
  • ENST00000460715.2:60
  • AK024044:71
  • AK314594:72
  • AH003763:81
  • ENST00000432079.5:-96
  • ENST00000506303.1:96
  • CR936683:-96
  • LF212847:188
  • MA448424:188
  • NM_004600.5:311
  • NM_001042369.2:311
  • NM_001173525.1:311
  • NM_001042370.2:311
  • ENST00000367446.7:471
  • BC036658:471
  • ENST00000367443.5:494
  • ENST00000367444.7:494
  • ENST00000367445.7:494
  • AY205314:494
  • AY205315:494
  • M25077:494
view more...
Gene_name:UCHL5
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-46
Nearest PromoterID:NM_001350847
Entrez ID:51377
Nearest Unigene:Hs.145469
Nearest Refseq:NM_015984
Nearest Ensembl:ENSG00000116750
Gene Name:UCHL5
Gene Alias:CGI-70|INO80R|UCH-L5|UCH37
Gene Type:protein-coding
CpG%:0.076923
GC%:0.642857
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "ENST00000469214.2:32 ENST00000400968.7:49 NM_001331020.2:49 NM_001173524.2:49 ENST00000415442.2:56 ENST00000460715.2:60 AK024044:71 AK314594:72 AH003763:81 ENST00000432079.5:-96 ENST00000506303.1:96 CR936683:-96 LF212847:188 MA448424:188 NM_004600.5:311 NM_001042369.2:311 NM_001173525.1:311 NM_001042370.2:311 ENST00000367446.7:471 BC036658:471 ENST00000367443.5:494 ENST00000367444.7:494 ENST00000367445.7:494 AY205314:494 AY205315:494 M25077:494" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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