TSS: Rfhg 176720.1: Difference between revisions

Revision as of 12:08, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_176720.1
Species:	human
Chr:	chr15

Start:	75758537
End:	75758549
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2811231,EH38E1778770)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000623240.1:0 ENST00000670625.1:0 ENST00000654378.1:0 ENST00000667063.1:0 ENST00000655161.1:0 AK123063:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000656245.1:2 ENST00000664305.1:-8 ENST00000569596.2:16 ENST00000661459.1:-19 ENST00000658217.1:-46 view more...

Gene_name:	MIR4313
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	3772
Nearest PromoterID:	NR_036198
Entrez ID:	100423035
Nearest Unigene:
Nearest Refseq:	NR_036198
Nearest Ensembl:	ENSG00000284385
Gene Name:	MIR4313
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.166667
GC%:	0.538462
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000623240.1:0 ENST00000670625.1:0 ENST00000654378.1:0 ENST00000667063.1:0 ENST00000655161.1:0 AK123063:0 ENST00000656245.1:2 ENST00000664305.1:-8 ENST00000569596.2:16 ENST00000661459.1:-19 ENST00000658217.1:-46
 |annotation=Intergenic
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_036198
 |nearest_refseq=NR_036198
+|nearest_transcripts=ENST00000656245.1:2 ENST00000664305.1:-8 ENST00000569596.2:16 ENST00000661459.1:-19 ENST00000658217.1:-46
 |nearest_unigene=
 |peak_score=1